PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART11G02970.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 473aa    MW: 53331.5 Da    PI: 4.5777
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART11G02970.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM95.67.9e-30331681128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyat.gkrknra.....tksgyWkatg 87 
                      lppG++F Ptdeelv++yL+ k+eg++ +  ++i+e +i++++P++L +k+k+ +e++wyfF+ r+ ++++ ++++nr+     +++g W+atg
  OBART11G02970.1  33 LPPGYHFVPTDEELVDFYLRGKIEGRDPPR-RFISEENIMRYDPQKLIEKYKGyGEDRWYFFMVREPSKTKkKDEPNRKvvvdgVEEGSWSATG 125
                      79*************************998.89**************8655553777*****9998776642779999656666679******* PP

              NAM  88 kdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +  +++s+    +++ +g k++L++   +a+++e+  W mhey l
  OBART11G02970.1 126 SVVQIHSTketnRKAIIGSKRVLTYK--SARSAENDMWSMHEYVL 168
                      ******9866655666*********9..5666669********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-3426185IPR003441NAC domain
PROSITE profilePS5100535.58533185IPR003441NAC domain
PfamPF023652.0E-1834168IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MENGGSGGDG SAAAAAAEGS AIWKSELVPQ LQLPPGYHFV PTDEELVDFY LRGKIEGRDP  60
PRRFISEENI MRYDPQKLIE KYKGYGEDRW YFFMVREPSK TKKKDEPNRK VVVDGVEEGS  120
WSATGSVVQI HSTKETNRKA IIGSKRVLTY KSARSAENDM WSMHEYVLAG KSQMGQYVLC  180
AIQLKQTYER EEKAREEQKN DNKRNKKAAR RKNMQQQPTA CQAQDEQQET APTPGEETIV  240
DPDQFMDIAH SMHMMFGGVD QDAPPFMPSL IAPCNNDDGM LQLQPLQLQN PNPAMLYSNQ  300
LEPSYVGDQS MFTPCCCGRN CISCRQLQFY QQQQAEDGSV AFGEADLYQQ HDRALGNTGV  360
YPDNVWVDGN MADYAQRQIY NDQDNGGVLM QGPEDSATFP DNFLMLDEMA AGSDDASGFD  420
YEVDQSRAVV PHVADQTVLF RATYWLRSWA QLLKCDEEIK SVKAACRNLE SMV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-17211875167NO APICAL MERISTEM PROTEIN
1ut4_B6e-17211875167NO APICAL MERISTEM PROTEIN
1ut7_A6e-17211875167NO APICAL MERISTEM PROTEIN
1ut7_B6e-17211875167NO APICAL MERISTEM PROTEIN
3swm_A6e-17211878170NAC domain-containing protein 19
3swm_B6e-17211878170NAC domain-containing protein 19
3swm_C6e-17211878170NAC domain-containing protein 19
3swm_D6e-17211878170NAC domain-containing protein 19
3swp_A6e-17211878170NAC domain-containing protein 19
3swp_B6e-17211878170NAC domain-containing protein 19
3swp_C6e-17211878170NAC domain-containing protein 19
3swp_D6e-17211878170NAC domain-containing protein 19
4dul_A6e-17211875167NAC domain-containing protein 19
4dul_B6e-17211875167NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3780340.0FQ378034.1 Oryza glaberrima chromosome 11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3HI670.0A0A0D3HI67_9ORYZ; Uncharacterized protein
STRINGOBART11G02970.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115562137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.12e-22NAC-like, activated by AP3/PI