PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART11G02350.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 192aa MW: 21391.4 Da PI: 9.5052 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 55.3 | 2.3e-17 | 6 | 126 | 8 | 128 |
NAM 8 hPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 +P ++l+++yL + ++gk+++ +e + ++d+y +eP+dL k + e+ fF++ ++++ +++rk+r++ +g+W + + k v++ OBART11G02350.2 6 RPIPKDLITFYLPRLIAGKPTKDTEKfVCRADVYGSEPSDLAgKfapvpR--CEKGGRLFFTSCKRHKGSSTRKERTAGDGTWVRQNS-KGVKN 96 57789***************6655544999***********843454222..2445779999999999****************8866.88999 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 k g +vg + + f ++g+ tdW+m+e + OBART11G02350.2 97 KAGVKVGETQNFRFK----KDGSYTDWLMEEHHC 126 9*************7....78999*******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 19.308 | 1 | 146 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.0E-8 | 6 | 125 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.44E-17 | 8 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0016787 | Molecular Function | hydrolase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MLFFPRPIPK DLITFYLPRL IAGKPTKDTE KFVCRADVYG SEPSDLAGKF APVPRCEKGG 60 RLFFTSCKRH KGSSTRKERT AGDGTWVRQN SKGVKNKAGV KVGETQNFRF KKDGSYTDWL 120 MEEHHCCRQQ AVAGDEEPVI CRMYVSPRAP PDSAARQESA AFVQQKPAPQ VSEPPCDKKK 180 RDDVAEEAPA AA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC123527 | 0.0 | AC123527.3 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0068G15, complete sequence. | |||
GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619129.1 | 1e-129 | NAC domain-containing protein 41 | ||||
TrEMBL | A0A0D3HHY6 | 1e-140 | A0A0D3HHY6_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM11G02060.1 | 1e-129 | (Oryza glumipatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10480.2 | 1e-07 | NAC domain containing protein 50 |