PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART11G01590.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 391aa MW: 43241.2 Da PI: 6.6968

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART11G01590.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.3	5.2e-52	11	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+v+yL +++++ k+++ +i+ev+iyk++PwdLp k+ +e+ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk++ls OBART11G01590.1 11 LPPGFRFHPTDEELIVHYLMNQAASVKCPV-PIIAEVNIYKCNPWDLPGKALFGENEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKSILS 103 79**************************.88***********8777899**********************************9 PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++ ++g+kk Lvfykg+ pkg+ktdW+mheyrl OBART11G01590.1 104 TpTSDNIGVKKALVFYKGKPPKGVKTDWIMHEYRL 138 988899*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.97E-64	7	172	IPR003441	NAC domain
PROSITE profile	PS51005	59.099	11	172	IPR003441	NAC domain
Pfam	PF02365	2.8E-26	12	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MPSSGGAMPA LPPGFRFHPT DEELIVHYLM NQAASVKCPV PIIAEVNIYK CNPWDLPGKA 60 LFGENEWYFF SPRDRKYPNG ARPNRAAGSG YWKATGTDKS ILSTPTSDNI GVKKALVFYK 120 GKPPKGVKTD WIMHEYRLTG TSANSTTTTK QRRASSMTMR LDDWVLCRIH KKSNDFNSSD 180 QHDQEPEGST VEQLEDIHDN NSSEAPAPAD MNNQQSDFQP MTAMMSMSKS CSLTDLLNTI 240 DCAALSQFLL DGSSDAIAEP PAPPSPLIYT TPHPNYQTLN YNINSNSSMP HAFESRLDHH 300 DGYVNNYNVN GLRRKRMMAC SATSFDDGSS SNDFVHAVVK KPQLLPSDSR GSGFGGGYCN 360 QQLSETATGF QFQNGNLLSH PFPLNNHLQM Q

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MPSSGGAMPA LPPGFRFHPT DEELIVHYLM NQAASVKCPV PIIAEVNIYK CNPWDLPGKA  60
LFGENEWYFF SPRDRKYPNG ARPNRAAGSG YWKATGTDKS ILSTPTSDNI GVKKALVFYK  120
GKPPKGVKTD WIMHEYRLTG TSANSTTTTK QRRASSMTMR LDDWVLCRIH KKSNDFNSSD  180
QHDQEPEGST VEQLEDIHDN NSSEAPAPAD MNNQQSDFQP MTAMMSMSKS CSLTDLLNTI  240
DCAALSQFLL DGSSDAIAEP PAPPSPLIYT TPHPNYQTLN YNINSNSSMP HAFESRLDHH  300
DGYVNNYNVN GLRRKRMMAC SATSFDDGSS SNDFVHAVVK KPQLLPSDSR GSGFGGGYCN  360
QQLSETATGF QFQNGNLLSH PFPLNNHLQM Q

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-73	11	178	15	174	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269\|PubMed:22278768}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269\|PubMed:18813954}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC123519	0.0	AC123519.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0017B18, complete sequence.
GenBank	AP014967	0.0	AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBank	CP012619	0.0	CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015615093.1	0.0	NAC transcription factor 29
Swissprot	Q8H4S4	2e-85	NAC10_ORYSJ; NAC domain-containing protein 10
TrEMBL	A0A0D3HHN3	0.0	A0A0D3HHN3_9ORYZ; Uncharacterized protein
STRING	OBART11G01590.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3803	37	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.1	1e-81	NAC domain containing protein 47

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]