PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART11G01100.2
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 280aa    MW: 31657.7 Da    PI: 6.5578
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART11G01100.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY58.81e-18122186259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSST....TEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedp....kvveitYegeHnhe 59 
                      +Dg++WrKYGqK +  ++++rsYYrC+ +   gCp++k v++ ++ +    k++++ Y g+H+++
  OBART11G01100.2 122 NDGHQWRKYGQKWISRAKHSRSYYRCANSkvqGCPATKTVQQMDSSGngtsKLFNVDYYGQHTCR 186
                      8*************************9887889********99876522226899*******995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.5E-22107186IPR003657WRKY domain
PROSITE profilePS5081114.665116163IPR003657WRKY domain
SuperFamilySSF1182901.28E-19117186IPR003657WRKY domain
SMARTSM007741.2E-28121187IPR003657WRKY domain
PfamPF031068.7E-22122186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MKILESFGHS DCQVVINMIE HQKALMVELR GMVMPVLPSD NEQAKLALQL LGDILSCSDK  60
AISMLELGGD TKKLTNLVGG KRKGNKHSMD NHNLEEEAKE SVSKRRKNAE HTGSTVAQAP  120
HNDGHQWRKY GQKWISRAKH SRSYYRCANS KVQGCPATKT VQQMDSSGNG TSKLFNVDYY  180
GQHTCRGDGI ADPYVVDIAH HSMEPINQNK CNSPTLEHEA HEVQDERFEN LCMVQNMPEY  240
LIDFELERAF EFIVNSPLGS EHWTFDDSIR CEHSPICIWG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1020930.0AK102093.1 Oryza sativa Japonica Group cDNA clone:J033083A06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616437.10.0probable WRKY transcription factor 67
TrEMBLA0A0D3HHH40.0A0A0D3HHH4_9ORYZ; Uncharacterized protein
TrEMBLI1R2M70.0I1R2M7_ORYGL; Uncharacterized protein
STRINGORGLA11G0201900.10.0(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.13e-18WRKY DNA-binding protein 46