PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART10G17440.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 378aa    MW: 40274.1 Da    PI: 4.864
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART10G17440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.6e-10217259754
                      HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+r+N++++ Lr+++P  +      K++  +iL  ++ Y+k+L
  OBART10G17440.1 217 MAERRRRKRLNDRLSMLRSVVPRiS------KMDRTSILGDTIGYVKEL 259
                      79*********************66......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.665210259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-14214269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-11216265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-14217270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-7217259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MELMDDDGSS SLLEELMAPL RRGTPTTTPE DLWLQAYPMM MSPMCGDGVM LGDLLVGGGN  60
ARNMLGDLLV GGGNARNTLA SPPPPPPPPS FPLPVPLTTT TPCPPLHEVS FEFDSIDCLG  120
EVCNPYKRSG GAVRATAAAQ VMVAAMDPRR EAASSAVAVA AVEEEERCKA RRGAGGGGDS  180
GELAPMFVFG GGGGAAASVR PRSCRPPQPG APSKNLMAER RRRKRLNDRL SMLRSVVPRI  240
SKMDRTSILG DTIGYVKELM DRIKNLQVEA ATGDSSSSST ENLSMLKLNT LKPPPSRENG  300
NTRIEMACAA IPELLPSTLA ALEALGVEIE QCVISCFDDF AMQASCLQDD KKREMTRDTE  360
EIKQTLFRSA GYGDGCLI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218225ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0636690.0AK063669.1 Oryza sativa Japonica Group cDNA clone:001-119-D04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613752.20.0transcription factor TDR-like
SwissprotQ9LSL11e-48BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A0D3HG760.0A0A0D3HG76_9ORYZ; Uncharacterized protein
STRINGOBART10G17440.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1831799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10570.19e-49bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]