PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART10G12340.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 530aa    MW: 57410.1 Da    PI: 7.7739
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART10G12340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.42.7e-2067100134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      C++Cgtt+Tp+WR+gp+g++tLCnaCG++yr+ +
  OBART10G12340.1  67 CRHCGTTETPQWRHGPEGHRTLCNACGMRYRSGK 100
                      *******************************976 PP
2GATA49.84.6e-16239272134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      C++CgttkTp WR gpd  ++LCnaCG +yr+  
  OBART10G12340.1 239 CAHCGTTKTPAWRLGPDSRRKLCNACGNKYRSGQ 272
                      *******************************976 PP
3GATA47.62.2e-15457491135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++CgttkTp W +gpd   +LCnaCG  yrk +l
  OBART10G12340.1 457 CTHCGTTKTPAWLSGPDSRGKLCNACGKQYRKGRL 491
                      ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.14E-1559122No hitNo description
PROSITE profilePS5011413.6796197IPR000679Zinc finger, GATA-type
SMARTSM004016.0E-1861115IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.2E-156599IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.81E-1566115No hitNo description
PfamPF003201.3E-1767100IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.558233269IPR000679Zinc finger, GATA-type
SMARTSM004017.4E-9233290IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.8E-12234288IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.38E-10235273No hitNo description
CDDcd002024.53E-9238270No hitNo description
PfamPF003202.3E-14239272IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.814389408IPR000679Zinc finger, GATA-type
SMARTSM004010.15389435IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.8E-4394408IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.62E-11450512No hitNo description
PROSITE profilePS5011410.093451487IPR000679Zinc finger, GATA-type
SMARTSM004011.5E-8451505IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.9E-10455489IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.76E-10456505No hitNo description
PfamPF003201.7E-13457491IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MVVVDGLHDG GGGDLQALLD DAGVDDVAAR GGGGGEVEEE VERPSNEDAF PAVEKMATAA  60
AAKGLQCRHC GTTETPQWRH GPEGHRTLCN ACGMRYRSGK LVPEYRPLRS PTFSPELHSN  120
RHHRVLQLRR RPGPQSAAPS PAAVARCGGE AKEEEEELAW VSNKDAFATV ETTMAPSPRV  180
VETPPEHDHR PPNIPTTSPE PHSDRPRRVV QLPRRLQEPS ASANLAHAVA AMARAGRECA  240
HCGTTKTPAW RLGPDSRRKL CNACGNKYRS GQLNSTTFSQ NSQEQKKKSK SSACSRERKR  300
SAVAATVVVG GGLRDDAAAI ADEHLDGGDL QALLDDVALD DVAARGGGDA GEAKEEEEEL  360
EWLSNKDAFP TVETMSPALP ENRTKVPVPP AGWQCRHCGS TETPLWRERD GPAEAEHVRK  420
EETPPNITPA TKHRRIVDLL RCSTALNTAA TAVERRCTHC GTTKTPAWLS GPDSRGKLCN  480
ACGKQYRKGR LVPEYRPLNC PTFSPELHSN AHAHRRRRES PVAIAIAGEK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613898.10.0GATA-type transcription factor sreA
TrEMBLA0A0D3HED90.0A0A0D3HED9_9ORYZ; Uncharacterized protein
STRINGOBART10G12340.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP157091414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.13e-25GATA transcription factor 1