PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART10G09860.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 290aa    MW: 31313.4 Da    PI: 9.2198
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART10G09860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM821.2e-25191541127
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                      lp Gf F Ptd++l+   L++k  g++  +++++ +++++i++++P +L  k ++ eek  +yfFskr+  ++++kr+ r+++ g W+++g   
  OBART10G09860.1  19 LPIGFYFAPTDQDLL-AILEAKRLGRPlSRAHDAfFHDIRILDFHPAELYeKYANDEEKgYIYFFSKREFPTSSKKRPLRVAEGGAWNSSGAVY 111
                      699************.7799999999954445556**************8344444555455******************************99 PP

              NAM  91 evlsk....kgelvglkktLvfykg..rapkgektdWvmheyr 127
                      +v+++    +g +vg kktLvf++    +++++kt+W ++e++
  OBART10G09860.1 112 KVVKSsksgGGYDVGHKKTLVFHQRflGDKEAVKTNWAIQEFT 154
                      9999766666666**********7545677889********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-3112173IPR003441NAC domain
PROSITE profilePS5100530.48919174IPR003441NAC domain
PfamPF023657.4E-1320154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MAAPEDGEDG NFGKNKRGLP IGFYFAPTDQ DLLAILEAKR LGRPLSRAHD AFFHDIRILD  60
FHPAELYEKY ANDEEKGYIY FFSKREFPTS SKKRPLRVAE GGAWNSSGAV YKVVKSSKSG  120
GGYDVGHKKT LVFHQRFLGD KEAVKTNWAI QEFTRIIGPQ NEVPDLAVYR LYKMRKEGRE  180
TPADLAADEA AAAAAMNNRG QQASAAAMAL PPPATGLPGG RMMSMADKAN MASTSKAYGP  240
SKSSSSQLQQ DAAAAAAPPN AAGASNWAPR PCNCQECAPA AGHVQLLTLF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2421580.0AK242158.1 Oryza sativa Japonica Group cDNA, clone: J075155G16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614025.11e-164spidroin-2
TrEMBLA0A0D3HDM40.0A0A0D3HDM4_9ORYZ; Uncharacterized protein
STRINGOBART10G09860.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.11e-12NAC family protein