PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART10G09840.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 412aa MW: 44029 Da PI: 6.4287 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 77.3 | 3.4e-24 | 22 | 149 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkya...tgkrknratksgyWkatgk 88 p+GfrF P+d+el+ + L k++g + l+ v+++++i++++P +L + ++ ee+ +yfFs+ + k+a ++k ++ra++ g+Wka OBART10G09840.1 22 PRGFRFVPRDQELL-DILDDKLRGAPldRALDAVFHDTRILDFHPAKLYgMYAEDEENgYIYFFSTIEFKAAkpkQKKWPRRAAQGGRWKAVLG 114 89************.88*********53333456**************83344444443459**998777663335778899********8866 PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 + ++++ +g vg k ++ fy kg++t+W mhe+ OBART10G09840.1 115 SSQMVEVGGVPVGRKLSMEFY----VKGVRTNWGMHEFV 149 6666666**************....899*********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-30 | 16 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 24.926 | 21 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-12 | 22 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MAAPGDGEEK KAGSGRNKHG FPRGFRFVPR DQELLDILDD KLRGAPLDRA LDAVFHDTRI 60 LDFHPAKLYG MYAEDEENGY IYFFSTIEFK AAKPKQKKWP RRAAQGGRWK AVLGSSQMVE 120 VGGVPVGRKL SMEFYVKGVR TNWGMHEFVR IIGPNIEVAD LAVYRLHKLW TNGEEKPGDL 180 AADVAKSTNQ SGQASAADYY QTYQNAVSQA YAYAPPYVLQ PGWSQGYPYD VAAAPPTAPW 240 PVCWAPPSAP GSYDCCYAST FSRPPPPPPI AASTLDKAPI TSTDHGASTN TSAATPAANN 300 KPPPPPVAAT ATTLGKKGEG KGKAPTTTST DHAGSTNTSA PPAANYQPPP LQGTQHVFAS 360 GVVIGHEDEE GYLVVDEVNT WRNTQQLVLE DDDDGRAAVA GAGEGGASAS GR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109904 | 0.0 | AK109904.1 Oryza sativa Japonica Group cDNA clone:002-149-F12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614522.1 | 0.0 | uncharacterized protein LOC4348616 | ||||
TrEMBL | A0A0D3HDM2 | 0.0 | A0A0D3HDM2_9ORYZ; Uncharacterized protein | ||||
STRING | OBART10G09840.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3563 | 23 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15500.1 | 2e-11 | NAC domain containing protein 3 |