PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART10G08890.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 406aa    MW: 44376.3 Da    PI: 5.1001
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART10G08890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM83.15.7e-26361721127
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeek..ewyfFskrdkkya..tgkrknratksgyWkatgkd 89 
                      +p+G  F P+d el     +k v+g+    l++v+++++i++++P  L+++++++e+   +yfFskr+ +++  +++r++r++k g+Wka+g +
  OBART10G08890.1  36 MPVGWYFVPKDLELFAILRCKLVRGQLpSALNNVFEHIRILEFHPALLHETYSGNEEdgYIYFFSKRQFTTKagNKRRPTRVAKGGTWKASGGS 129
                      699************7766666777663444556999***********9544443333366****99865553378899*************** PP

              NAM  90 kevlsk..kgelvglkktLvfyk...grapkgektdWvmheyr 127
                      k+v sk  +g ++g k t+vfy+   ++++++ kt+W mhe++
  OBART10G08890.1 130 KTVRSKkvGGIDIGQKLTMVFYErrfEDDRNPIKTNWGMHEFT 172
                      ****99888889**********62224677888********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.8E-3530196IPR003441NAC domain
PROSITE profilePS5100531.55236193IPR003441NAC domain
PfamPF023651.1E-1337172IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MAEQPPEGSG GGGNNNGKWK GKEKVVPEYG KNRHGMPVGW YFVPKDLELF AILRCKLVRG  60
QLPSALNNVF EHIRILEFHP ALLHETYSGN EEDGYIYFFS KRQFTTKAGN KRRPTRVAKG  120
GTWKASGGSK TVRSKKVGGI DIGQKLTMVF YERRFEDDRN PIKTNWGMHE FTKIIDGTKN  180
QLEDLAVYRL YKIKRKEDEE PSNTAAAASS TDEPSTSSAL PPPTPPRPLP DMAGPSSATP  240
LLPLQLPGLA GSSSAMSLPA LQLSPAPPPA VDHHHRLSPP HDAAGSNYNH PELADYNGGV  300
QAQHEHQYHP QEPQASLVDA EDGYSAMAGG DDAQLGGAEL DTERIAEMVN HIMDGEFEFK  360
FEDNTVLKYN EVFPDNDEVV AAPMMIDGGR DGDGADGGDG DDPFDN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0923880.0AC092388.5 Oryza sativa chromosome 10 BAC OSJNBa0011L09 genomic sequence, complete sequence.
GenBankAC1221440.0AC122144.1 Oryza sativa Japonica Group chromosome 10 clone OSJNAa0011L09, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651177.11e-146NAC transcription factor NAM-B2 isoform X1
TrEMBLA0A0D3HDB00.0A0A0D3HDB0_9ORYZ; Uncharacterized protein
STRINGOBART10G08890.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.12e-14NAC family protein