PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART10G07890.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 760aa    MW: 88770.5 Da    PI: 9.1399
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART10G07890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM25.34.3e-082012910128
              NAM  10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFsk.rdkkyatgkrknratksgyWkatgkdkevlskkgelvgl 102
                      +d e++  +L+++ + ++l+  +++  vd++ ++P+d p       + w+   + ++  y  +++  r++k+gyWk      ++ + +++  g+
  OBART10G07890.1  20 SDTEII-MFLAERKTWDPLPQ-NILVGVDLTMIDPRDSP------GTLWFLNWPdNQLCYDDENNVFRKAKNGYWKCVDA-CRIQT-GTSILGV 103
                      689999.88888888899888.889************99......3456554440444566788889999******8866.56766.8999*** PP

              NAM 103 kktLvfykgrapkgektdWvmheyrl 128
                      k  L f++g++p g+++  +m ey +
  OBART10G07890.1 104 KLCLEFHEGQTPCGTRSGLMMYEYLI 129
                      ************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-245150IPR003441NAC domain
PROSITE profilePS5100519.3811150IPR003441NAC domain
SuperFamilySSF540011.4E-8556758No hitNo description
Gene3DG3DSA:3.90.70.102.4E-8556758No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 760 aa     Download sequence    Send to blast
MELFSRVLPP LGIAMGDSWS DTEIIMFLAE RKTWDPLPQN ILVGVDLTMI DPRDSPGTLW  60
FLNWPDNQLC YDDENNVFRK AKNGYWKCVD ACRIQTGTSI LGVKLCLEFH EGQTPCGTRS  120
GLMMYEYLIE QNDELNLPQA YKSLCRMFLQ EDRKIVEDEH ISLNLGVHHN FLGSYSQYLA  180
EIQRQNMVMN SQAVSSDKKS IFIRELDERK SKKCSTKITR SSTRLYRQKI PHIWCLRHSV  240
SRKWFRHYES MFRVIDKLAI LLESVLLDLT TVRQKINKGK KRIWKMEGKL EKAQIQHLTD  300
FNNKYGPSIR QSVETAEHNN CALRRLNNYL ELMIEEPRFS SIAYVRLDSQ VKKLDKENTS  360
AMDLSSSLHQ MLQKLNLRVQ DEEVWVSQLG SNLQASFRKI MDTSSEIGKL EDEVLQLKVD  420
IAEFAPGEVT SCAVYEMIKT LQIVELFMNN STRHLKLIDG INSEMREFGS IFNGKVRCLV  480
RFARYQQTIM EKSTQINLFQ IINFLGDIRA KVDKMTQMYG LSEVVPIDSN QFIEGSFNAD  540
AYAFESLKEH STDLCFSWRT RKFHNRLILP PVRQQTSGTC SYYATLSSVE SLYKREYASY  600
PTILKDKIGQ PDEFLVNLSR AQLEDIVEDF YTRHKVKGSK RLNVCLDKMK NEGVISEESY  660
MNPQAQSTER YKIKQYEELN LEIAMRERDK EEVSIVDKKC IGKKKKRRFR KKMRMKEHIF  720
LTKIKKVIES HIMDGKVLIA SFRVTTGYFR LLPHQIYKIP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1702707KKKKRR
2702710KKKKRRFRK
3703707KKKRR
4707713RFRKKMR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0645520.0AK064552.1 Oryza sativa Japonica Group cDNA clone:002-112-C01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612846.10.0uncharacterized protein LOC4348481 isoform X2
TrEMBLA0A0D3HCZ20.0A0A0D3HCZ2_9ORYZ; Uncharacterized protein
STRINGOBART10G07890.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2031355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.15e-12NAC domain containing protein 83