PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART10G04050.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 485aa    MW: 54246.7 Da    PI: 4.4192
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART10G04050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM97.51.9e-30341652128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyat.gkrknra.....tksgyWkatgk 88 
                        G++F P+deelv++yL+ k+e+++l++ ++i+evdi++++P +L +k+k+ +e++wyfF+ r++++++ ++++nr+     +++g W+atg+
  OBART10G04050.1  34 SSGYHFVPSDEELVDFYLRGKIEQRRLPM-DFINEVDIMSFDPVKLIEKYKGyGENRWYFFTMRKSSKTKkKDEPNRKvvvdgVEEGSWSATGS 126
                      57***************************.99**************8555554888*****9998777652779999656666679******** PP

              NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++ k +++++g+k++L++   +a+++e+ +W mhey +
  OBART10G04050.1 127 VAYICGKdHETVIGTKRVLTYK--SARSAEEDKWSMHEYVM 165
                      *****99667779********9..5666669********75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-3525182IPR003441NAC domain
PROSITE profilePS5100535.69333182IPR003441NAC domain
PfamPF023651.2E-1735164IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MTAESNGGNS SSAATMASNG GRRRHELVPK LRLSSGYHFV PSDEELVDFY LRGKIEQRRL  60
PMDFINEVDI MSFDPVKLIE KYKGYGENRW YFFTMRKSSK TKKKDEPNRK VVVDGVEEGS  120
WSATGSVAYI CGKDHETVIG TKRVLTYKSA RSAEEDKWSM HEYVMLDKSQ MDQYVLCAIQ  180
LKQTYEAEKK AQEEERGVKR KRTATRKRRK GDIDQTTSQE QEDQQQETPP PGDPHDQSVV  240
DAPYYSMQMT LGGEEEVAPV PWCADCMAQP DRIEYPAVWY NQQEQQPLQL VDRSMMTQGY  300
IGDLSYIQNQ FDQQQAHDHG SINAFDEALD QCHDTNFAWD NAGIYPGNNL LDGNLDDDTQ  360
DQFGNQATLG ALTGELEYGT GYQFHDALQA TPGSDDASAQ SMGIQPAAGH SMGDDDETCC  420
NDDLSSLLAD ISRILLDGNG VINNAGNPEG SNQGLHICKD GHQWPLEEST MPTVECVLQH  480
PGESA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-17201892174Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3HBQ40.0A0A0D3HBQ4_9ORYZ; Uncharacterized protein
STRINGOBART10G04050.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115562137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-21NAC-like, activated by AP3/PI