PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G23880.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 136aa    MW: 14927.3 Da    PI: 9.0097
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G23880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.61e-202072156
              AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                     ++y+GVr+++ +g+++AeIrd      ++ r++lg+f+taeeAa+a+++a+ +++g+
  OBART08G23880.1 20 TKYRGVRRRP-SGKFAAEIRDS---SrQSVRVWLGTFDTAEEAARAYDRAAYAMRGH 72
                     69********.7*********3...2236**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.26E-182080No hitNo description
PfamPF008472.4E-162072IPR001471AP2/ERF domain
PROSITE profilePS5103222.9722179IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-232180IPR016177DNA-binding domain
SMARTSM003801.7E-332185IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-302180IPR001471AP2/ERF domain
PRINTSPR003673.7E-102233IPR001471AP2/ERF domain
PRINTSPR003673.7E-104561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MDGGGGGGWD DQGNGGGETT KYRGVRRRPS GKFAAEIRDS SRQSVRVWLG TFDTAEEAAR  60
AYDRAAYAMR GHLAVLNFPA EARNYVRGSG SSSSSRQQQQ RQVIELECLD DQVLQEMLKG  120
GDDQYRSAAG SKRNNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-32161139114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0045870.0AP004587.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0543D10.
GenBankAP0046230.0AP004623.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0705A05.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025883263.12e-93ethylene-responsive transcription factor 14-like
SwissprotQ9LTC53e-34ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A0D3H3A71e-93A0A0D3H3A7_9ORYZ; Uncharacterized protein
TrEMBLI1QKH51e-93I1QKH5_ORYGL; Uncharacterized protein
STRINGORGLA08G0192600.12e-94(Oryza glaberrima)
STRINGOBART08G23880.12e-94(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04370.13e-24Ethylene-responsive element binding factor 14
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]