PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART08G21800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 217aa MW: 23307.5 Da PI: 9.3876 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 86.5 | 4.9e-27 | 19 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk.atgkdkev 92 lppGfrFhPtdeelvv+yL++k+ g +l++ vi+++ +++k++Pwd+p + +++ + yfF+ r +++ +g+r++ +++ g Wk a g+dk+v OBART08G21800.1 19 LPPGFRFHPTDEELVVQYLRRKAFGLPLPA-AVIPDLhNLFKLDPWDIPGA--SSDGDKYFFAVRPHAA-RGRRQQVTASGGCWKpAGGRDKPV 108 79****************************.8899998***********43..456789*****99875.68899999999****666789**9 PP NAM 93 lsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +++lvg+kk + g Wvmhey+l OBART08G21800.1 109 VVArcgGSHLVGVKKGMEGT------G-GGCWVMHEYSL 140 99777777778888887543......2.458******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.93E-38 | 14 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 35.981 | 19 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.4E-18 | 20 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MERAAAAAPV VMRHGGVVLP PGFRFHPTDE ELVVQYLRRK AFGLPLPAAV IPDLHNLFKL 60 DPWDIPGASS DGDKYFFAVR PHAARGRRQQ VTASGGCWKP AGGRDKPVVV ARCGGSHLVG 120 VKKGMEGTGG GCWVMHEYSL ALPMHKKGCL AEAEEWVVCR IFQRSSSGSR SPRRPDNDVR 180 RTMPAVAELG RSPSPSSSSS QSSCVTSSSD QEEVSSG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-28 | 19 | 170 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-28 | 19 | 170 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-28 | 19 | 170 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-28 | 19 | 170 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-28 | 19 | 170 | 20 | 174 | NAC domain-containing protein 19 |
3swm_B | 7e-28 | 19 | 170 | 20 | 174 | NAC domain-containing protein 19 |
3swm_C | 7e-28 | 19 | 170 | 20 | 174 | NAC domain-containing protein 19 |
3swm_D | 7e-28 | 19 | 170 | 20 | 174 | NAC domain-containing protein 19 |
3swp_A | 7e-28 | 19 | 170 | 20 | 174 | NAC domain-containing protein 19 |
3swp_B | 7e-28 | 19 | 170 | 20 | 174 | NAC domain-containing protein 19 |
3swp_C | 7e-28 | 19 | 170 | 20 | 174 | NAC domain-containing protein 19 |
3swp_D | 7e-28 | 19 | 170 | 20 | 174 | NAC domain-containing protein 19 |
4dul_A | 7e-28 | 19 | 170 | 17 | 171 | NAC domain-containing protein 19 |
4dul_B | 7e-28 | 19 | 170 | 17 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK061543 | 0.0 | AK061543.1 Oryza sativa Japonica Group cDNA clone:006-311-A02, full insert sequence. | |||
GenBank | AK067906 | 0.0 | AK067906.1 Oryza sativa Japonica Group cDNA clone:J013126H02, full insert sequence. | |||
GenBank | AK068776 | 0.0 | AK068776.1 Oryza sativa Japonica Group cDNA clone:J013160K11, full insert sequence. | |||
GenBank | AK104766 | 0.0 | AK104766.1 Oryza sativa Japonica Group cDNA clone:001-038-H11, full insert sequence. | |||
GenBank | EU846997 | 0.0 | EU846997.1 Oryza sativa Japonica Group clone KCS078C08 NAC4 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650414.1 | 1e-116 | NAC domain-containing protein 18 | ||||
TrEMBL | A0A0D3H2L1 | 1e-157 | A0A0D3H2L1_9ORYZ; Uncharacterized protein | ||||
STRING | OBART08G21800.1 | 1e-157 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11818 | 31 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.1 | 6e-31 | NAC domain containing protein 41 |