PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G20120.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 386aa    MW: 42088.4 Da    PI: 6.5064
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G20120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1691.6e-52742041128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      lppGfrFhPtdeelv++yL++kv +  +    v i+evd++++ePw+Lp++++ +ekewyfFs rd+ky+tg r+nrat +gyWkatgkd+ev+
  OBART08G20120.1  74 LPPGFRFHPTDEELVTFYLAAKVFNGACCG-GVdIAEVDLNRCEPWELPEAARMGEKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVV 166
                      79*************************888.455***************9888999************************************** PP

              NAM  94 sk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++   +g+l+g+kktLvfykgrap+gekt+Wv+heyrl
  OBART08G20120.1 167 AAaaaGGALIGMKKTLVFYKGRAPRGEKTKWVLHEYRL 204
                      998888999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.8E-61638IPR003441NAC domain
SuperFamilySSF1019415.49E-6365227IPR003441NAC domain
PROSITE profilePS5100559.13574227IPR003441NAC domain
PfamPF023655.0E-2775204IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MGDALWEMLG EEMAAAAAAG EHGLPPGFRF HPTDEELGTS DSEMHHHSAT MGDALWEMLG  60
EEMAAAAAAG EHGLPPGFRF HPTDEELVTF YLAAKVFNGA CCGGVDIAEV DLNRCEPWEL  120
PEAARMGEKE WYFFSLRDRK YPTGLRTNRA TGAGYWKATG KDREVVAAAA AGGALIGMKK  180
TLVFYKGRAP RGEKTKWVLH EYRLDGDFAA ARRSTKEEWV ICRIFHKVGD QYSKLMMMKS  240
PASYYLPVSH HHPSSIFHDL PPVPFPNPSL VPFHHDLPTS FHPPLLQHSH ANSKNSSSNN  300
GGFVFPNEPN TTNSSDNHIS CNGAMAAAAF PSFSCASTVT GKGRPPAQLG VNAGQQEPPP  360
PTWMDAYLQH SGFIYEMGPP AVPRGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-497422717165NO APICAL MERISTEM PROTEIN
1ut4_B9e-497422717165NO APICAL MERISTEM PROTEIN
1ut7_A9e-497422717165NO APICAL MERISTEM PROTEIN
1ut7_B9e-497422717165NO APICAL MERISTEM PROTEIN
3swm_A9e-497122717168NAC domain-containing protein 19
3swm_B9e-497122717168NAC domain-containing protein 19
3swm_C9e-497122717168NAC domain-containing protein 19
3swm_D9e-497122717168NAC domain-containing protein 19
3swp_A9e-497122717168NAC domain-containing protein 19
3swp_B9e-497122717168NAC domain-containing protein 19
3swp_C9e-497122717168NAC domain-containing protein 19
3swp_D9e-497122717168NAC domain-containing protein 19
4dul_A9e-497422717165NAC domain-containing protein 19
4dul_B9e-497422717165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0060490.0AP006049.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0016N23.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648828.10.0protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A0D3H2180.0A0A0D3H218_9ORYZ; Uncharacterized protein
STRINGOBART08G20120.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112373341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.18e-81NAC family protein