PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G19340.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 648aa    MW: 70652.3 Da    PI: 7.9901
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G19340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.74.8e-33250306259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +DgynWrKYGqK+vk+se+prsYY+Ct+++C vkkkvers+ d++++ei+Y+g+Hnh+
  OBART08G19340.1 250 EDGYNWRKYGQKQVKNSEHPRSYYKCTFTNCAVKKKVERSQ-DGQITEIVYKGSHNHP 306
                      8****************************************.***************7 PP
2WRKY105.52.7e-33461519159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+vers++d k v++tYeg+Hnhe
  OBART08G19340.1 461 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCSVRKHVERSSHDLKSVITTYEGKHNHE 519
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-29245308IPR003657WRKY domain
SuperFamilySSF1182902.09E-26247308IPR003657WRKY domain
SMARTSM007745.3E-37249307IPR003657WRKY domain
PROSITE profilePS5081123.146250308IPR003657WRKY domain
PfamPF031062.1E-25250306IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-37446521IPR003657WRKY domain
SuperFamilySSF1182904.32E-29453521IPR003657WRKY domain
PROSITE profilePS5081137.597456521IPR003657WRKY domain
SMARTSM007741.7E-38461520IPR003657WRKY domain
PfamPF031062.5E-25462519IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MSSFLNEEFS SGPFSDIFCD NGSNKHQDGL GKSKAFIDSS REETAQLAKK FESNLFGANQ  60
KSSSNGCLSE RMAARTGFGV LKIDTSRVGY STPIRSPVTI PPGVSPRELL ESPVFLPNAI  120
AQPSPTTGKL PFLMHSNVKP SIPKKTEDET RHDRVFFFQP IWDLSHQLVQ LQRSVNHQNQ  180
PSVTDNHQEL SLQSSSTAAK DFTSATIVKP KTSDSMLDND DHPSPANDQE ENATNKNEEY  240
SSDLIITPAE DGYNWRKYGQ KQVKNSEHPR SYYKCTFTNC AVKKKVERSQ DGQITEIVYK  300
GSHNHPLPPS NRRPNVPFSH FNDLRDDHSE KFGSKSGQAT ATSWENAANG HLQDVGSEVL  360
TKLSASLTTT EHAEKSVMDK QEAVDISSTL SNEEDDRVTH RAPLSLGFDA NDDDAEHKRR  420
KMDVYAATST STNAIDIGAV ASRAVREPRV VVQTTSEVDI LDDGYRWRKY GQKVVKGNPN  480
PRSYYKCTHP GCSVRKHVER SSHDLKSVIT TYEGKHNHEV PAARNSGHPS SGSAAAPQAT  540
NGLLHRRPEP AQGGGGGSLA QFGYGSAGHR PAEQFGAAAA GFSFGMLPRS IATPAPSPAI  600
AVPAMQGYPG LVLPRGEMKV NLLPQSGNAG AAASQQLMGR LPKQHPQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36250522878Probable WRKY transcription factor 4
2lex_A1e-36250522878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0655180.0AK065518.1 Oryza sativa Japonica Group cDNA clone:J013025I24, full insert sequence.
GenBankAY8706100.0AY870610.1 Oryza sativa (japonica cultivar-group) WRKY30 mRNA, complete cds.
GenBankCT8288680.0CT828868.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI209L14, full insert sequence.
GenBankCT8288690.0CT828869.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI216M15, full insert sequence.
GenBankDQ2981800.0DQ298180.1 Oryza sativa (japonica cultivar-group) WRKY transcription factor 30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650158.10.0probable WRKY transcription factor 2
RefseqXP_015650159.10.0probable WRKY transcription factor 2
RefseqXP_015650160.10.0probable WRKY transcription factor 2
RefseqXP_015650162.10.0probable WRKY transcription factor 2
RefseqXP_015650163.10.0probable WRKY transcription factor 2
RefseqXP_015650164.10.0probable WRKY transcription factor 2
RefseqXP_015650165.10.0probable WRKY transcription factor 2
RefseqXP_025883130.10.0probable WRKY transcription factor 2
RefseqXP_025883131.10.0probable WRKY transcription factor 2
TrEMBLA0A0D3H1S50.0A0A0D3H1S5_9ORYZ; Uncharacterized protein
STRINGOBART08G19340.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-113WRKY DNA-binding protein 2