PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OBART08G17900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 222aa MW: 23988.4 Da PI: 4.7384 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.2 | 3.1e-16 | 87 | 129 | 9 | 55 |
AP2 9 dkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++ +g+W+AeIrdp+ r r +lg+f+taeeAa+a+++a+ +++g OBART08G17900.1 87 RP-WGKWAAEIRDPR----RaVRKWLGTFDTAEEAARAYDRAAVEFRG 129 56.**********82....48***********************9998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 20.798 | 79 | 137 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.9E-6 | 81 | 92 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-19 | 84 | 138 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.6E-28 | 84 | 143 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-26 | 84 | 137 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.57E-25 | 87 | 137 | No hit | No description |
Pfam | PF00847 | 2.1E-9 | 87 | 129 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.9E-6 | 103 | 119 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 222 aa Download sequence Send to blast |
MTNRISAMGG NQEYMIRFDG HIDDASPSSA TAEPPPPLPP PRPFAGRAIS AEREHSVIVA 60 TLLHVISGYR TPPPEVFPAA RAEVCGRPWG KWAAEIRDPR RAVRKWLGTF DTAEEAARAY 120 DRAAVEFRGP RAKLNFPFPE QLSAHDDSNG DASAAAKSDT LSPSPRSADA DEQVEHTRWP 180 QGGGGGGGGG ETGDQLWEGL QDLMQLDEGG LSWFPQSSDS WN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-16 | 84 | 138 | 9 | 64 | ATERF1 |
3gcc_A | 3e-16 | 84 | 138 | 9 | 64 | ATERF1 |
5wx9_A | 3e-16 | 87 | 144 | 21 | 79 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK062882 | 0.0 | AK062882.1 Oryza sativa Japonica Group cDNA clone:001-108-D06, full insert sequence. | |||
GenBank | AP004399 | 0.0 | AP004399.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0451G12. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004973673.1 | 4e-91 | ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | A0A0D3H1B0 | 1e-159 | A0A0D3H1B0_9ORYZ; Uncharacterized protein | ||||
STRING | OBART08G17900.1 | 1e-160 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1242 | 36 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G34410.1 | 2e-17 | redox responsive transcription factor 1 |