PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G16740.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 162aa    MW: 17986.4 Da    PI: 7.3929
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G16740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding491.5e-15955148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     + +WT+eEde l +av+++   +W+ Ia  ++ +R +k+c++rw ++l
  OBART08G16740.1  9 KTPWTQEEDEALRRAVREHRRQNWAEIALALP-RRGPKSCRLRWCQHL 55
                     579*****************************.***********9986 PP
2Myb_DNA-binding47.73.5e-1563104346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +T+eEd +++   + +G++ W+tIar+++ gR+++ +k+rw++
  OBART08G16740.1  63 VFTAEEDAIILAQQRVHGNK-WATIARCLP-GRSDNAVKNRWNS 104
                      59******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.696459IPR017930Myb domain
SMARTSM007172.4E-15857IPR001005SANT/Myb domain
SuperFamilySSF466894.15E-288102IPR009057Homeodomain-like
PfamPF002497.6E-15955IPR001005SANT/Myb domain
CDDcd001678.35E-141155No hitNo description
Gene3DG3DSA:1.10.10.607.4E-221162IPR009057Homeodomain-like
SMARTSM007173.5E-1160108IPR001005SANT/Myb domain
PROSITE profilePS5129414.06962110IPR017930Myb domain
PfamPF002496.6E-1263104IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-1863106IPR009057Homeodomain-like
CDDcd001674.45E-1064103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MAADGGGRKT PWTQEEDEAL RRAVREHRRQ NWAEIALALP RRGPKSCRLR WCQHLSPELD  60
SRVFTAEEDA IILAQQRVHG NKWATIARCL PGRSDNAVKN RWNSALLQLF PARAGGVKEA  120
GLFAGEKDVE EEDVATSLTL GLPVLCEAEL ELRLGPAWPA TA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3zqc_A3e-279106299MYB3
3zqc_D3e-279106299MYB3
3zqc_G3e-279106299MYB3
3zqc_J3e-279106299MYB3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126161e-173CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649306.11e-101transcription factor MYB77
SwissprotQ9SN123e-34MYB77_ARATH; Transcription factor MYB77
TrEMBLA0A0D3H0X81e-112A0A0D3H0X8_9ORYZ; Uncharacterized protein
STRINGOBART08G16740.11e-113(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49603465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.11e-36myb domain protein 77
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]