PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G16250.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 246aa    MW: 26558.2 Da    PI: 4.5502
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G16250.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.71.8e-102573155
              AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     s+y+GV +++ +g+W+A+I   +   g +k+ +l    t eeAa a++ a+ + +g
  OBART08G16250.1 25 SKYRGVARHHHNGKWEARIGRvF---G-NKYLYLA---TQEEAAVAYDIAAIEHRG 73
                     89****99**********99966...3.5****77...89***********99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.25E-122583IPR016177DNA-binding domain
PfamPF008472.4E-52572IPR001471AP2/ERF domain
CDDcd000181.93E-192583No hitNo description
SMARTSM003803.5E-182687IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-112681IPR001471AP2/ERF domain
PROSITE profilePS5103212.9182681IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MEGQSREEYI GSLRRKSSGF SRGVSKYRGV ARHHHNGKWE ARIGRVFGNK YLYLATQEEA  60
AVAYDIAAIE HRGLNAVTNF DINLYIRWYH GSCRSSSAAA ATTIEDDDFA EAIAAALQGV  120
DEQPIGLLLR SPKFKEIIEQ AAAAAASSSG SSSSSSTDSP SSSSSSSLSP SPLPSPPPQQ  180
QPTVPKDDQY NVDMSSVAAA RCSFPDDVQT YFGLDDDGFG YPEVDTFLFG DLGAYAAPMF  240
QFELDV
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1067690.0AK106769.1 Oryza sativa Japonica Group cDNA clone:002-115-F07, full insert sequence.
GenBankAP0047640.0AP004764.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0708B04.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651011.11e-135AP2-like ethylene-responsive transcription factor At1g79700
SwissprotQ94AN44e-48AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0D3H0S21e-180A0A0D3H0S2_9ORYZ; Uncharacterized protein
STRINGOBART08G16250.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.25e-42AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]