PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G15340.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 231aa    MW: 25907.7 Da    PI: 8.0464
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G15340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF374.5e-12546142
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     kri n+ +    f k ++g+ KKA+ELS+LC ++ +++++++
  OBART08G15340.1  5 KRIINDAKWRAAFKKQLKGLKKKASELSTLCSVDTCLMVYGE 46
                     68899999999*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0054157IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.975146IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-15591IPR002100Transcription factor, MADS-box
PfamPF003193.4E-11646IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MARNKRIIND AKWRAAFKKQ LKGLKKKASE LSTLCSVDTC LMVYGEGEVQ ATEVWPSVQE  60
ATRVLERFKA MPQLDRYKKT MDLDGFIKER TDKLQEKLHK VRRDADESET KILIVEAFYS  120
RCAGLEDLTI EQLTSLGWIA DAQLKIVNNH FQKFREQGLL LESASLSGMN VPPYTIAGYL  180
AVEEAQMQRE GWLMNIARGI GSLGYNGFEG SSGSATAEPN GDMVQHLNKG A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629573.11e-109agamous-like MADS-box protein AGL80
TrEMBLA0A0D3H0G01e-171A0A0D3H0G0_9ORYZ; Uncharacterized protein
STRINGOBART08G15340.11e-172(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-22AGAMOUS-like 80