PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART08G14070.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

ERF

Protein Properties

Length: 83aa MW: 9056.04 Da PI: 9.2532

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART08G14070.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	52.7	1e-16	28	78	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 +++GVr ++ +g++ AeI++ ++++ +lg+f+taeeA + +++a+++l+g+ OBART08G14070.1 28 KFRGVRKRP-WGKYGAEIHV----SqQSAHMWLGTFDTAEEATRVYDHAALRLRGP 78 89*****.******....3245************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	2.5E-23	27	83	IPR001471	AP2/ERF domain
SMART	SM00380	3.0E-20	28	83	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.045	28	83	IPR001471	AP2/ERF domain
CDD	cd00018	6.58E-23	28	83	No hit	No description
SuperFamily	SSF54171	4.71E-17	28	83	IPR016177	DNA-binding domain
Pfam	PF00847	5.9E-10	28	77	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.7E-9	29	40	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.7E-9	51	67	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 83 aa Download sequence Send to blast
MCRSGEEDGS GGGRGGFGTS VDVTPERKFR GVRKRPWGKY GAEIHVSQQS AHMWLGTFDT 60 AEEATRVYDH AALRLRGPSG MTN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	4e-17	28	83	14	70	Ethylene-responsive transcription factor ERF096
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:16832061}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004636	1e-127	AP004636.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0685B10.
GenBank	AP014964	1e-127	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBank	CP012616	1e-127	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015642210.2	4e-31	ethylene-responsive transcription factor 11
Swissprot	Q9FK12	6e-21	CRF3_ARATH; Ethylene-responsive transcription factor CRF3
TrEMBL	A0A0D3H028	1e-54	A0A0D3H028_9ORYZ; Uncharacterized protein
STRING	OBART08G14070.1	2e-55	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP103	37	465

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53290.1	5e-23	cytokinin response factor 3

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Raines T, et al. The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis. Plant J., 2016. 85(1): p. 134-47 [PMID:26662515] Jeon J,Cho C,Lee MR,Van Binh N,Kim J CYTOKININ RESPONSE FACTOR2 (CRF2) and CRF3 Regulate Lateral Root Development in Response to Cold Stress in Arabidopsis. Plant Cell, 2016. 28(8): p. 1828-43 [PMID:27432872]