PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G10580.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 586aa    MW: 66372.5 Da    PI: 9.2532
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G10580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.21.5e-18221031199
                      HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      + ++ +v+p +f++++  k  +s t+tle+++g+ ++v +   k+ +r++l +GW+ Fv+an ++e+Df+ F++ g+s+f   v+vf++
  OBART08G10580.1  22 F-KHSMVIPDRFLSHFAAK--SSGTITLETPNGNMYKVGV--GKNMKRTLLLSGWEAFVHANSIQENDFLSFRYRGSSRF--AVTVFDA 103
                      4.456********777655..5669***************..********************************998888..9999987 PP
2B343.27.3e-144595341389
                      TT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
               B3  13 sgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                      s  l +pk++a++h  +  es+ +tl+   ++++W  +l++++ ++ y+l++ W +Fv +n++ egD+++F+ ++  +
  OBART08G10580.1 459 SPFLEIPKEYAAAHFPN--ESVAITLQMlGKNKKWHPRLCMENDKRIYMLRGHWLDFVLDNHVMEGDICLFEPMKGGK 534
                      34588*********855..6778888885577****************************************665444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.66211104IPR003340B3 DNA binding domain
SuperFamilySSF1019366.87E-2012105IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2E-1014104IPR003340B3 DNA binding domain
CDDcd100175.58E-1819102No hitNo description
Gene3DG3DSA:2.40.330.103.7E-1920104IPR015300DNA-binding pseudobarrel domain
PfamPF023622.1E-1621103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-9225338IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-9226329IPR015300DNA-binding pseudobarrel domain
CDDcd100172.75E-7232328No hitNo description
SMARTSM010190.0024232330IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-19439538IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-19441540IPR015300DNA-binding pseudobarrel domain
CDDcd100175.62E-16444535No hitNo description
SMARTSM010193.0E-8446544IPR003340B3 DNA binding domain
PROSITE profilePS5086312.041447543IPR003340B3 DNA binding domain
PfamPF023622.7E-12457535IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MRKPCECCHT KMKFIWQMNG NFKHSMVIPD RFLSHFAAKS SGTITLETPN GNMYKVGVGK  60
NMKRTLLLSG WEAFVHANSI QENDFLSFRY RGSSRFAVTV FDASGLEKVY FCCAAAGMKN  120
ASNNVQKKAR TYIDILSSSD DHTTQSSASD TSDECQKARP NHHGKQAKKP SVSSSEDLSA  180
EDGSSGHRSL ESEDLGRFSS PYYLPGHHKL AKEQKAELVA LVDKIQPEIC VLVIIMNKTN  240
VKRHPDLVVP KDALLHFPHK NQIITLELPG KRKNWACKFR IRADGGGRHL YLGDFVHDNR  300
ILEGDLCILQ PMTKNDASVF TMTVHLIRKE RTDIASSHQT RKINSGGISS SSHHDTTRHI  360
HQLVCVCTNR MHVCNFIAHS FHLPVETCVV CIGEGSPDEN DSFKSDDLQT LTITDYVLSY  420
KSYLSRAQTG QVIMLLGEIR PKKPVLVAVM RKKNVQSSSP FLEIPKEYAA AHFPNESVAI  480
TLQMLGKNKK WHPRLCMEND KRIYMLRGHW LDFVLDNHVM EGDICLFEPM KGGKFLCSQF  540
TSFAPRQLIA RVELVFKGLA QVMEEPIQRW HQVFILRKNQ LMVWKA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2370910.0AC237091.1 Oryza glaberrima clone OG_BBa0009K13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3GYZ00.0A0A0D3GYZ0_9ORYZ; Uncharacterized protein
STRINGOBART08G10580.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-20B3 family protein