PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G10540.4
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 406aa    MW: 45747 Da    PI: 8.1871
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G10540.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.49.6e-1731111995
                      HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      +   ++ +++pk+f+++ +g+   + +++le+++ +s +v++  +k+++++++t+GW +Fvk  +L+ gD+++F+++g+s+f   v 
  OBART08G10540.4  31 MGDFQHEMIIPKEFVQRLKGD--IPGEIQLETRNRNSHTVRV--DKTQEKVIFTEGWAQFVKTFDLQMGDSMMFRFNGNSQF--DVI 111
                      5556788********999888..5558***************..*********************************99999..544 PP
2B341.62.2e-133194021099
                      HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      +++ + l++ +++++++ ++   +kt+   ++ g +W+++l  + +sg   + +G ++F+++n++ +gD+++F+l ++++ +++v+++r+
  OBART08G10540.4 319 SGRISSLSIANRYVDNYLQD---EKTIC-LSRLGDKWNIRL--SDSSGNRRMVGGCRKFAEDNDVGVGDICLFELLKNHKCTMKVHIIRA 402
                      55667899******888433...23555.7789********..77777777889*********************9998888****9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.87E-2120114IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.7E-2020114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.71623116IPR003340B3 DNA binding domain
CDDcd100172.23E-1724114No hitNo description
SMARTSM010199.8E-826116IPR003340B3 DNA binding domain
PfamPF023621.4E-1434109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-16303403IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-15304403IPR015300DNA-binding pseudobarrel domain
CDDcd100176.88E-14307401No hitNo description
SMARTSM010195.6E-4309403IPR003340B3 DNA binding domain
PROSITE profilePS508639.291310403IPR003340B3 DNA binding domain
PfamPF023627.8E-12317402IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MGTSCERCRR RDEQDYRNLD DSQKHFLLTM MGDFQHEMII PKEFVQRLKG DIPGEIQLET  60
RNRNSHTVRV DKTQEKVIFT EGWAQFVKTF DLQMGDSMMF RFNGNSQFDV IIVDQIGREK  120
ACSAVVDDSQ NPNVQERRVD ATETLNSSRA HSQPMPMQST TETVNHSHAR PCPMHTAVDC  180
MPLSHAHPQP MPMQFPTETV NHCHAPTGPM EMPLENVALS HAHARPLQMQ SQPTDRLTQV  240
QRGNSSKGNM TTMSSSSMSS GYSLSSKDQD CRVGVIPDPI IGQKTILSRV QVNVVKRKIQ  300
NIGSQIPIFV SVIGKNNASG RISSLSIANR YVDNYLQDEK TICLSRLGDK WNIRLSDSSG  360
NRRMVGGCRK FAEDNDVGVG DICLFELLKN HKCTMKVHII RAKDIC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0683590.0AK068359.1 Oryza sativa Japonica Group cDNA clone:J013146O10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648704.10.0B3 domain-containing protein Os08g0324300
RefseqXP_015648705.10.0B3 domain-containing protein Os08g0324300
RefseqXP_015648706.10.0B3 domain-containing protein Os08g0324300
RefseqXP_015648707.10.0B3 domain-containing protein Os08g0324300
SwissprotQ6Z0D90.0Y8347_ORYSJ; B3 domain-containing protein Os08g0324300
TrEMBLA0A0D3GYY60.0A0A0D3GYY6_9ORYZ; Uncharacterized protein
STRINGORUFI08G11760.40.0(Oryza rufipogon)
STRINGONIVA08G05080.20.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-13B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]