PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G03430.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 738aa    MW: 80703.1 Da    PI: 6.0184
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G03430.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.6e-072450128
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIa 28
                     r rWT+ E+ ++++a k++G   W +I 
  OBART08G03430.1 24 RERWTEAEHNRFLEALKLYGRA-WQRIE 50
                     78******************88.**996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.11E-51849IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.9E-42451IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0042754Biological Processnegative regulation of circadian rhythm
GO:0043433Biological Processnegative regulation of sequence-specific DNA binding transcription factor activity
GO:0046686Biological Processresponse to cadmium ion
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 738 aa     Download sequence    Send to blast
MEINSSGEEA VVKVRKPYTI TKQRERWTEA EHNRFLEALK LYGRAWQRIE GLIARSMNGE  60
EHKLEKEAIN NGTSPGQAHD IDIPPPRPKR KPNSPYPRKS CLSSETSTRE VQNDKATISN  120
MTNNSTAQMA GDAALEKLTY IQKLQRKEIS EKGSCSEVLN LFREVPSASF SSVNKSSSNH  180
GASRGLEPTK TEVKDMVILE RDSISNGAGK DAKDINDQEM ERLNGIHISS KPDHSHENCL  240
DTSSQQFKPK SNSVEITYVD WSAAKASHYQ MDRNGVTGFQ ATGTEGSGGA SGTMNQCIHP  300
TLPVDPKFDG NAAAQPFPHN YAAFAPMMQC HCNQDAYRSF ANMSSTFSSM LVSTLLSNPA  360
IHAAARLAAS YWPTVDGNTP DPNQENLSES AQGSHAGSPP NMASIVAATV AAASAWWATQ  420
GLLPLFPPPI AFPFVPAPSA PFSTADVQRA QEKDIDCPMD NAQKELQETR KQDNSEAMKV  480
IVSSETDESG KGEVSLHTEL KISPADKADT KPAAGAETSD VFGNKKKQDR SSCGSNTPSS  540
SDIEADNAPE NQEKANDKAK QASCSNSSAG DNNHRRFRSS ASTSDSWKEV SEEVVVYQHS  600
AYSHLSYSLN IHHCFSNSHF CCQGRLAFDA LFSRERLPQS FSPPQVEGSK EISKEEEDEV  660
TTVTVDLNKN AAIIDQELDT ADEPRASFPN ELSNLKLKSR RTGFKPYKRC SVEAKENRVP  720
ASDEVGTKRI RLESEAST
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00654PBMTransfer from LOC_Os08g06110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0044600.0AP004460.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0438H08.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649835.10.0protein LHY isoform X1
RefseqXP_015649836.10.0protein LHY isoform X1
RefseqXP_015649837.10.0protein LHY isoform X1
RefseqXP_025875636.10.0protein LHY isoform X1
RefseqXP_025875637.10.0protein LHY isoform X1
RefseqXP_025875638.10.0protein LHY isoform X1
RefseqXP_025875639.10.0protein LHY isoform X1
TrEMBLA0A0D3GWI30.0A0A0D3GWI3_9ORYZ; Uncharacterized protein
STRINGOBART08G03430.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60313447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46830.12e-29circadian clock associated 1