PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART07G20660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 195aa MW: 19741.1 Da PI: 8.1561 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.1 | 0.0006 | 41 | 63 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F + L H +H OBART07G20660.1 41 FRCSLCGKAFASYQALGGHKASH 63 89**********99998888877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 1.5E-12 | 40 | 65 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.866 | 41 | 68 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.0E-8 | 41 | 63 | No hit | No description |
SMART | SM00355 | 0.026 | 41 | 63 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 43 | 63 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.0E-8 | 103 | 130 | No hit | No description |
Pfam | PF13912 | 2.2E-7 | 107 | 130 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.014 | 108 | 135 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 4.6 | 108 | 130 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 110 | 130 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MEQGGGAADG GDLISLCLMA LAAAARGEST ALAPPPPELH FRCSLCGKAF ASYQALGGHK 60 ASHRKPSAAA AAPPAHRDVV VAAAPASSGG VAADAAAASE ADGRRRRHVC SLCRRGFATG 120 QALGGHKRFH YLHGPSVSAT VSSAETAASV GAAFDLNVAP IKEIAGEQRR CGEEADDDDE 180 AESPSPAKKP RRRPG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111301 | 0.0 | AK111301.1 Oryza sativa Japonica Group cDNA clone:002-181-B04, full insert sequence. | |||
GenBank | AP003750 | 0.0 | AP003750.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1174_G05. | |||
GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015646226.1 | 2e-70 | zinc finger protein 36-like | ||||
TrEMBL | A0A0D3GT07 | 1e-133 | A0A0D3GT07_9ORYZ; Uncharacterized protein | ||||
STRING | OBART07G20660.1 | 1e-134 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14898 | 17 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27730.1 | 2e-07 | salt tolerance zinc finger |