PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART07G07070.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 310aa    MW: 32440.4 Da    PI: 6.5315
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART07G07070.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_178.67.9e-25187249163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      e+elkrerrkq+NRe+ArrsR+RK++e+eeL++kv+eL++eN+aL++el++lkk ++ +++e+
  OBART07G07070.1 187 ERELKRERRKQSNRESARRSRLRKQQECEELARKVAELTTENSALRSELDQLKKACEDMEAEN 249
                      89*********************************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF165965.3E-850164No hitNo description
Gene3DG3DSA:1.20.5.1707.2E-18186246No hitNo description
PfamPF001703.3E-22187249IPR004827Basic-leucine zipper domain
SMARTSM003383.4E-22187251IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.553189252IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.06E-12190245No hitNo description
CDDcd147023.19E-20192242No hitNo description
PROSITE patternPS000360194209IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MASSSDEQPK PPEPPAAAAA GVPYPTAEAM AAAAAGAVPE GKGKGKGAAA SPEKGSSAAP  60
SGDDASRSGD SGSEESSDTR DDDTDHKDSS APKKRKSGNT SAEGEPSQAT LVPYAAVESP  120
YPLKGRSASK LPVSAPGRAA LPNATPNLNI GIDLWSTPPA LAVPAGQGEA SPGLALARRD  180
GVAHLDEREL KRERRKQSNR ESARRSRLRK QQECEELARK VAELTTENSA LRSELDQLKK  240
ACEDMEAENT RLMGDKAQYK GPTVTTTLGM SIDSSKTQHH DDEGQLHKNT NNNSNGNYVG  300
GSHKPEANSR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203209RRSRLRK
2203210RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtInteracts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2891790.0AK289179.1 Oryza sativa Japonica Group cDNA, clone: J100028J17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644731.11e-162DNA-binding protein EMBP-1
SwissprotP250322e-55EMBP1_WHEAT; DNA-binding protein EMBP-1
TrEMBLA0A0D3GNL50.0A0A0D3GNL5_9ORYZ; Uncharacterized protein
STRINGOBART07G07070.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21603692
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.18e-24basic region/leucine zipper transcription factor 16