PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART07G05360.3
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 401aa    MW: 44001 Da    PI: 4.727
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART07G05360.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.41.3e-13118220199
                      EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE..E-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk..ldgr 87 
                      f+k+l+ sd   + r++ p   a+       + k  ++  l ++d++g  +++ +   +ks+r++l+k Wk+F ++ +  +gD+v+F+  +d++
  OBART07G05360.3 118 FVKTLMISDFDFRIRFSAPMADAKGVfpplvDAKAVQP--LLVKDLHGSPMTFDY--GRKSKRVTLAKVWKKFRDDMDFVDGDSVIFMrrRDDD 207
                      899********************888**9986666676..999************..*******************************765667 PP

                      .SEE..EEEEE-S CS
               B3  88 .sefelvvkvfrk 99 
                       +++el+v+v+++
  OBART07G05360.3 208 dDDGELYVGVRSQ 220
                      799******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-12116224IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-11116225IPR015300DNA-binding pseudobarrel domain
CDDcd100171.85E-8117200No hitNo description
SMARTSM010190.0037118221IPR003340B3 DNA binding domain
PfamPF023621.7E-10118220IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MAAAAAALAD DGDGIVDRAM WLACAAPNSG RLPAVGSVVF YFVDGHAAQF CQFPAPLLEQ  60
LAVPGPRVFL CTVAAVRLRA DALTNEAYAE ITLDPVADHD VPRLAPAPAP APAALRYFVK  120
TLMISDFDFR IRFSAPMADA KGVFPPLVDA KAVQPLLVKD LHGSPMTFDY GRKSKRVTLA  180
KVWKKFRDDM DFVDGDSVIF MRRRDDDDDD GELYVGVRSQ RTLERPLRNT MRRYRPPTPP  240
QAAVQEAVLA AAGHAAAGER FTVAYRSRQD GDEFVVPREA VEEGLRARLT SLAEVEFVWA  300
VEDGAPPIVG PRGKVTAIAT GQLWRNLEIV WDGNSEMDMS ANFWQVRPVE EVDISPSTPP  360
PKRLKNCEID DTASTSVSVD NGDEEVPTMR QRLEALIPDN I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A3e-2813321336Auxin response factor 1
4ldy_B3e-2813321336Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0646610.0AK064661.1 Oryza sativa Japonica Group cDNA clone:002-115-A08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646443.10.0B3 domain-containing protein Os07g0183200
SwissprotQ8H5070.0Y7832_ORYSJ; B3 domain-containing protein Os07g0183200
TrEMBLA0A0D3GN220.0A0A0D3GN22_9ORYZ; Auxin response factor
STRINGONIVA07G04110.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.11e-27auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]