PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART07G02350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 307aa MW: 34013 Da PI: 4.7217 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 113.1 | 3.1e-35 | 38 | 151 | 2 | 107 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 pGfrFhPtdeelv++yL++k++gk+l++ e+ike+diyk++P+d+ +++ ++ekewyfF+ r +ky+++ r+nr+t sg+Wkatg d++++s OBART07G02350.1 38 LPGFRFHPTDEELVTFYLRRKIAGKRLSI-EIIKEMDIYKHDPSDFLkTSTVGSEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRPIYS 130 69***************************.89*************96345556789************************************** PP NAM 95 k........kgelvglkktLv 107 + +g +glkk+L OBART07G02350.1 131 SslaaaaaaGGDCIGLKKSLE 151 877776666666699999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 33.172 | 37 | 197 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.23E-37 | 37 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.0E-16 | 39 | 151 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MVPSAEMKRG CEDELGAGDV ILRGVEEVEE EEDDDLVLPG FRFHPTDEEL VTFYLRRKIA 60 GKRLSIEIIK EMDIYKHDPS DFLKTSTVGS EKEWYFFCLR GRKYRNSIRP NRVTGSGFWK 120 ATGIDRPIYS SSLAAAAAAG GDCIGLKKSL EVWTICRIFQ RNITHKKQPQ PQLAVAAAAV 180 PAPVPDATSS ITGSLESDSA GDDVVEYMNT LQPPPASNVN GGYSNQHYFQ EQWNSSSNDN 240 TTVFHQHAAP PPEPSPATAM AGFGHDQSVL SSPAPSDFYY KDGCNDDIYR MVMELADPSL 300 FYDHIYA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-31 | 24 | 150 | 2 | 118 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012615 | 0.0 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015646514.1 | 1e-174 | transcription factor JUNGBRUNNEN 1 | ||||
Swissprot | Q9SK55 | 9e-58 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A0D3GM25 | 0.0 | A0A0D3GM25_9ORYZ; Uncharacterized protein | ||||
STRING | OBART07G02350.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1191 | 38 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 6e-55 | NAC domain containing protein 42 |