PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G26550.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 1160aa    MW: 128223 Da    PI: 6.5466
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G26550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.69.9e-23154255199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++
  OBART06G26550.1 154 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFV--RD 243
                      99*****************************954.4444.49************************************************..56 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++++l+++++r+
  OBART06G26550.1 244 EKQQLLLGIRRA 255
                      88889****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.27E-43143283IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-41146269IPR015300DNA-binding pseudobarrel domain
CDDcd100174.67E-19153245No hitNo description
SMARTSM010191.6E-22154256IPR003340B3 DNA binding domain
PROSITE profilePS5086311.801154256IPR003340B3 DNA binding domain
PfamPF023621.2E-20154255IPR003340B3 DNA binding domain
PfamPF065071.5E-33280363IPR010525Auxin response factor
PfamPF023091.8E-910241111IPR033389AUX/IAA domain
PROSITE profilePS5174526.93810261110IPR000270PB1 domain
SuperFamilySSF542774.51E-710381105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1160 aa     Download sequence    Send to blast
MMKQAQQQPP PPPTSSAATT TTAMAAAAAA AVVGSGCEGE KTKAPAINSE LWHACAGPLV  60
SLPPAGSLVV YFPQGHSEQV AASMQKDVDA HVPSYPNLPS KLICLLHNVT LHADPETDEV  120
YAQMTLQPVT SYGKEALQLS ELALKQARPQ TEFFCKTLTA SDTSTHGGFS VPRRAAEKIF  180
PPLDFSMQPP AQELQARDLH DNVWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDSVIF  240
VRDEKQQLLL GIRRANRQPT NISSSVLSSD SMHIGILAAA AHAAANNSPF TIFYNPRASP  300
TEFVIPFAKY QKAVYGNQIS LGMRFRMMFE TEELGTRRYM GTITGISDLD PVRWKNSQWR  360
NLQVGWDESA AGERRNRVSI WEIEPVAAPF FICPPPFFGA KRPRQLDDES SEMENLLKRA  420
MPWLGEEICI KDPQTQNTIM PGLSLVQWMN MNMQQSSSFV NTAMQSEYLR SLSNPNMQNL  480
GAADLSRQLC LQNQLLQQNN IQFNTPKLSQ QMQPVNELAK AGIPLNQLGV STKPQEQIHD  540
ASNLQRQQPS MNHMLPLSQA QTNLGQAQVL VQNQMQQQHA SSTQGQQPAT SQPLLLPQQQ  600
QQQQQQQQQQ QQQQQQKLLQ QQQQQLLLQQ QQQLSKMPAQ LSSLANQQFQ LTDQQLQLQL  660
LQKLQQQQQS LLSQPAVTLA QLPLIQEQQK LLLDMQQQLS NSQTLSQQQM MPQQSTKVPS  720
QNTPLPLPVQ QEPQQKLLQK QAMLADTSEA AVPPTTSVNV ISTTGSPLMT TGATHSVLTE  780
EIPSCSTSPS TANGNHLLQP ILGRNKHCSM INTEKVPQSV APMSVPSSLE AVTATPRMIK  840
DSPKLNHNVK QSVVASKLAN AGTGSQNYVN NPPPTDYLET ASSATSVWLS QNDGLLHQNF  900
PMSNFNQPQM FKDAPPDAEI HAANTSNNAL FGINGDGPLG FPIGLGTDDF LSNGIDAAKY  960
ENHISTEIDN SYRIPKDAQQ EISSSMVSQS FGASDMAFNS IDSTINDGGF LNRSSWPPAA  1020
PLKRMRTFTK VYKRGAVGRS IDMSQFSGYD ELKHALARMF SIEGQLEERQ RIGWKLVYKD  1080
HEDDILLLGD DPWEEFVGCV KCIRILSPQE VQQMSLEGCD LGNNIPPNQA CSSSDGGNAW  1140
RARCDQNSGN PSNGSYEQFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1714238446388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0712960.0AB071296.1 Oryza sativa OsARF7a mRNA for auxin response factor 7a, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643493.10.0auxin response factor 19
SwissprotQ0D9R70.0ARFS_ORYSJ; Auxin response factor 19
TrEMBLA0A0D3GKI20.0A0A0D3GKI2_9ORYZ; Auxin response factor
STRINGOBART06G26550.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang S, et al.
    The auxin response factor, OsARF19, controls rice leaf angles through positively regulating OsGH3-5 and OsBRI1.
    Plant Cell Environ., 2015. 38(4): p. 638-54
    [PMID:24995795]