PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G21860.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 410aa    MW: 45553.2 Da    PI: 9.6758
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G21860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.53.6e-11241171395
                      TT-EE--HHH.HTT............---.....--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3  13 sgrlvlpkkfaeeh............ggkke...esktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      ++rl++p +fa++             +   e   +   + +  + g++W+v l+  +++ +    +l++GW+e + a+gL eg  vv++l++r 
  OBART06G21860.1  24 LHRLSVPGEFAARLddddaagvgeeeE---EsgrRAAAVLVVGPLGKVWRVXLR--RSPAGdgeAWLGGGWSELAAAHGLGEGWGVVLRLERRG 112
                      589********9999999999865542...1444677899999**********5..54444447*************************99876 PP

                      EE..EEE CS
               B3  89 efelvvk 95 
                       +   ++
  OBART06G21860.1 113 VA--SLR 117
                      66..444 PP
2B335.91.3e-11145234397
                      EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      k l ++d      + +p kf+++   +  +++++  ++  + g+ W+v+l  ++ +  ++l++GW  F  a++L eg +++ +++g++ f  +v
  OBART06G21860.1 145 KLLQQEDL---EKMKIPEKFVQQQltETYTNNHQNAIIVCPLGKFWRVEL--QREQPDVLLRDGWAPFLAAHDLSEGNILLVRYEGNMVF--TV 231
                      55533333...3478******8889944445667899999**********..999999****************************9999..66 PP

                      EEE CS
               B3  95 kvf 97 
                       vf
  OBART06G21860.1 232 EVF 234
                      665 PP
3B3391.4e-12319399486
                      E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
               B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                      +++++++  s +l++  +f++++g+ +++ +tl++  ++  sW+v ++ + +  +y+ + GW++F+ +n++kegD ++F  ++
  OBART06G21860.1 319 KEMTAYSIHS-LLSVRGTFCSQIGLLEACAITLKISMKKKGSWRVAFK-TANTYGYINGPGWRKFCLENEVKEGDRLTFNAIE 399
                      4446666655.69**********************************5.5555579***********************9665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-1310122IPR015300DNA-binding pseudobarrel domain
CDDcd100172.36E-912112No hitNo description
SuperFamilySSF1019363.34E-1112124IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.1E-514122IPR003340B3 DNA binding domain
PfamPF023621.8E-825114IPR003340B3 DNA binding domain
PROSITE profilePS508639.38926122IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-17138239IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-17139243IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.589140237IPR003340B3 DNA binding domain
CDDcd100176.94E-12141234No hitNo description
SMARTSM010198.2E-4143237IPR003340B3 DNA binding domain
PfamPF023622.2E-8152234IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-15314408IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.94E-13315408IPR015300DNA-binding pseudobarrel domain
CDDcd100172.03E-6316395No hitNo description
PfamPF023621.4E-9317399IPR003340B3 DNA binding domain
SMARTSM010190.031317408IPR003340B3 DNA binding domain
PROSITE profilePS508639.686348410IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MPLSAGSLRR RPKFAAPLLS PACLHRLSVP GEFAARLDDD DAAGVGEEEE ESGRRAAAVL  60
VVGPLGKVWR VXLRRSPAGD GEAWLGGGWS ELAAAHGLGE GWGVVLRLER RGVASLRVFD  120
PGFCLARFCT PHAGMRTKDR PRFIKLLQQE DLEKMKIPEK FVQQQLTETY TNNHQNAIIV  180
CPLGKFWRVE LQREQPDVLL RDGWAPFLAA HDLSEGNILL VRYEGNMVFT VEVFLQNGCL  240
KEYKTAALYL TDGTEGPSNA PQQSAAKVGV SPVKRKRTRR IEGTCLEGPN RKSRASPISV  300
KVEQHKKHVS IVSQNSFTKE MTAYSIHSLL SVRGTFCSQI GLLEACAITL KISMKKKGSW  360
RVAFKTANTY GYINGPGWRK FCLENEVKEG DRLTFNAIET TVWHVVIVHC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0047921e-178AP004792.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0505A04.
GenBankAP0149621e-178AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642658.10.0putative B3 domain-containing protein Os06g0632500 isoform X1
SwissprotQ67VL70.0Y6325_ORYSJ; Putative B3 domain-containing protein Os06g0632500
TrEMBLA0A0D3GIY50.0A0A0D3GIY5_9ORYZ; Uncharacterized protein
STRINGOBART06G21860.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.12e-11B3 family protein