PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G21000.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 439aa    MW: 48144.7 Da    PI: 9.0018
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G21000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.42.6e-12138166533
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLee 33 
                      k  rr+++NReAAr+sR+RKka+i++Le+
  OBART06G21000.1 138 KTLRRLAQNREAARKSRLRKKAYIQQLET 166
                      7789***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.8E-9132178No hitNo description
SMARTSM003381.2E-5134206IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.565136165IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.44E-7138168No hitNo description
PfamPF001702.4E-9138166IPR004827Basic-leucine zipper domain
PROSITE patternPS000360141156IPR004827Basic-leucine zipper domain
PfamPF141441.2E-25215289IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MFRKVGQPES FSASHGYDMP SDLDQALLLY FDGQEQDKPS TQEEPHKPLN FVKETLNIFP  60
SQPMDGEPTP TPKASMSAPP IAGFSRRSPA PAAADGRPLT LGKTSKAAFK KEGGSGSGGA  120
MAASASSELK GPKTPDPKTL RRLAQNREAA RKSRLRKKAY IQQLETGRIR LAHLEQEIQF  180
TRAQGAFCGA GILSPDAALF NLEYERWQEA HHQVISRLRA AVEEHRPDGE LQPHVDEAMS  240
HYGVLMAHKA RLVGADPLHL LSGLWKGAVE QCFLWIGGFR PSELIKVVIR HVEPLTEQQL  300
AAVYSAQQAA RQEEDALDGG LQALLRSLSD VVSSDAPSSS QQTPPVMYHP SAAAAMAAAS  360
FMGQYGSYSN LQLAMDKLAN LSIFLRQADE ERMRTLHALR RMLTVRQAAR CFVAVDDYFG  420
RLRALALFWT TTRPHPAAG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1199090.0AK119909.1 Oryza sativa Japonica Group cDNA clone:002-183-A10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644001.10.0transcription factor TGAL8 isoform X2
SwissprotQ69T210.0TGAL8_ORYSJ; Transcription factor TGAL8
TrEMBLA0A0D3GIN90.0A0A0D3GIN9_9ORYZ; Uncharacterized protein
STRINGORGLA06G0174900.10.0(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.33e-94bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]