PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART06G20370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 243aa MW: 25368.4 Da PI: 10.0322 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.7 | 3.3e-19 | 6 | 55 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54 ++++GVr+++ +g+Wv+eIr+p +r++lg+f taeeAa+a+++a+ + OBART06G20370.1 6 KKFRGVRQRH-WGSWVSEIRHP-----LlkRRVWLGTFETAEEAARAYDEAAILMS 55 59*******9.**********8.....334*********************98776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.02E-32 | 6 | 66 | No hit | No description |
PROSITE profile | PS51032 | 21.957 | 7 | 64 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.5E-39 | 7 | 70 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-20 | 7 | 65 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.5E-12 | 7 | 54 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.7E-33 | 7 | 65 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-10 | 8 | 19 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-10 | 30 | 46 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MGQSKKKFRG VRQRHWGSWV SEIRHPLLKR RVWLGTFETA EEAARAYDEA AILMSGRNAK 60 TNFPVARNAT GELTPAAAVA GRDGRVGGGS GSSSSMTANG GGNSLSQILS AKLRKCCKTP 120 SPSLTCLRLD PEKSHIGVWQ KRAGARADSS WVMTVELNKD TAVSSAATVA AATAASSSDQ 180 PTPSDSTVTT TSTSTTGSPS PPPPAMDDEE RIALQMIEEL LGRSGPGSPS HGLLHGGEGS 240 LVI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-16 | 6 | 68 | 4 | 67 | ATERF1 |
3gcc_A | 6e-16 | 6 | 68 | 4 | 67 | ATERF1 |
5wx9_A | 2e-15 | 1 | 68 | 8 | 76 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ369789 | 0.0 | GQ369789.1 Oryza sativa Indica Group cultivar N22 AP2 transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641433.1 | 1e-176 | ethylene-responsive transcription factor WIN1 | ||||
Swissprot | Q9XI33 | 4e-73 | WIN1_ARATH; Ethylene-responsive transcription factor WIN1 | ||||
TrEMBL | A0A0D3GIG6 | 1e-175 | A0A0D3GIG6_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0ABL6 | 1e-175 | A0A0E0ABL6_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1Q3G6 | 1e-175 | I1Q3G6_ORYGL; Uncharacterized protein | ||||
STRING | OGLUM06G21440.1 | 1e-176 | (Oryza glumipatula) | ||||
STRING | ORGLA06G0167900.1 | 1e-176 | (Oryza glaberrima) | ||||
STRING | OBART06G20370.1 | 1e-176 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3717 | 38 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G15360.1 | 3e-55 | ERF family protein |