PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART06G13940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 298aa MW: 32061.3 Da PI: 9.6098 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 178.2 | 2.2e-55 | 7 | 134 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+++yL +kv + +++ ++i+e+d++k+ePw+Lp+k+k +ekewyf+s rd+ky+tg r+nrat +gyWkatgkd+e+ s OBART06G13940.1 7 LPPGFRFHPTDEELITYYLLRKVVDGSFNG-RAIAEIDLNKCEPWELPEKAKMGEKEWYFYSLRDRKYPTGLRTNRATGAGYWKATGKDREIRS 99 79*************************999.89***************99999****************************************9 PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +g+lvg+kktLvfy+grapkg+kt+Wvmheyrl OBART06G13940.1 100 ArTGALVGMKKTLVFYRGRAPKGQKTQWVMHEYRL 134 868889***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.59E-62 | 6 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.819 | 7 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.2E-28 | 8 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0010160 | Biological Process | formation of organ boundary | ||||
GO:0010223 | Biological Process | secondary shoot formation | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048504 | Biological Process | regulation of timing of organ formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MERCRELPPG FRFHPTDEEL ITYYLLRKVV DGSFNGRAIA EIDLNKCEPW ELPEKAKMGE 60 KEWYFYSLRD RKYPTGLRTN RATGAGYWKA TGKDREIRSA RTGALVGMKK TLVFYRGRAP 120 KGQKTQWVMH EYRLDGTYAY HFLSSSTRDE WVIARIFTKP GVFPVVRKGR LGISGGGGDT 180 SCFSDSTSAS VGGTSCFSDS TSASVGGGGG TSASSALRAP LAEASLFAAA AAPAENLQLP 240 LFLSGGMQAG VSSQPLSGGG AFHWQSGMDV KVEGAVGRAP PQMAVGPGQL DGAFAWGF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-54 | 7 | 159 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-54 | 7 | 159 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-54 | 7 | 159 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-54 | 7 | 159 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-54 | 7 | 159 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-54 | 7 | 159 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-54 | 7 | 159 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-54 | 7 | 159 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-54 | 7 | 159 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-54 | 7 | 159 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-54 | 7 | 159 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-54 | 7 | 159 | 20 | 168 | NAC domain-containing protein 19 |
4dul_A | 1e-54 | 7 | 159 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-54 | 7 | 159 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Controls leaf margin development and required for leaf serration. Involved in axillary meristem initiation and separation of the meristem from the main stem. Regulates the phyllotaxy throughout the plant development. Seems to act as an inhibitor of cell division. {ECO:0000269|PubMed:10079219, ECO:0000269|PubMed:10750709, ECO:0000269|PubMed:12163400, ECO:0000269|PubMed:12492830, ECO:0000269|PubMed:12610213, ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15500463, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16798887, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:17122068, ECO:0000269|PubMed:17251269, ECO:0000269|PubMed:17287247, ECO:0000269|PubMed:9212461}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00562 | DAP | Transfer from AT5G53950 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By BRM and SYD, at the chromatin level, and conferring a very specific spatial expression pattern. Precise spatial regulation by post-transcriptional repression directed by the microRNA miR164. {ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16854978, ECO:0000269|PubMed:17251269, ECO:0000269|PubMed:17287247}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004679 | 0.0 | AP004679.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0021N09. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812735.1 | 1e-130 | protein CUP-SHAPED COTYLEDON 1-like | ||||
Swissprot | O04017 | 2e-91 | NAC98_ARATH; Protein CUP-SHAPED COTYLEDON 2 | ||||
TrEMBL | A0A0D3GGB1 | 0.0 | A0A0D3GGB1_9ORYZ; Uncharacterized protein | ||||
STRING | OBART06G13940.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9940 | 35 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53950.1 | 1e-92 | NAC family protein |