PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G12040.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 641aa    MW: 73325.6 Da    PI: 9.4469
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G12040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.8e-07426466346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT+eE e++ + v++ G+  W + a+++g  +++ ++k+ w+ 
  OBART06G12040.1 426 KWTPEEYEKIRRHVEKNGTS-WISLAQELG--KSEIHLKDTWRR 466
                      8*****************99.********8..9*******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.2350421IPR001005SANT/Myb domain
PROSITE profilePS500903.95353419IPR017877Myb-like domain
SuperFamilySSF466891.2E-6399473IPR009057Homeodomain-like
SMARTSM007170.51423470IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-6425473IPR009057Homeodomain-like
PROSITE profilePS500906.806426468IPR017877Myb-like domain
PfamPF139211.3E-5427470No hitNo description
SMARTSM0071721488554IPR001005SANT/Myb domain
PROSITE profilePS500906.574489552IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.1E-5491571IPR009057Homeodomain-like
SuperFamilySSF466891.64E-6532609IPR009057Homeodomain-like
PROSITE profilePS500907.898554607IPR017877Myb-like domain
SMARTSM0071719558609IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MGGEGAERRS KKEKGKRQEE KAESGSRGDG EAVKLDLATD SLSNSKGKVA MDVEEAKEMP  60
RRKKRKEKEK EKGHGKEKKN KVIADNIEEA CAEAEQAEAS GLKVEQHCSE HVQGDMSKCG  120
SEEDKSIKKD NKLMMKKKKK KERKVEMAEE GQILAGSTDE NAGLLHAEMG RGEKEQGKKS  180
KKSKRKHEDG EPVADGSAGD EIMTNRDKKR RRKEQSVELK EGDQVNISKK AVKIKGNKKR  240
KNESDKFNPD LSTDALTGED KVGGDGKNDK RKKKNDTSTR RNEVGRDDKN DKKKKKSKEG  300
NGGRKGEKEK AAQSKDKVRR VSFSDAVEVF SINDGEDEDN GKSAESEVVH GKRFTPEENA  360
TLMEAIMSYI EMKQLGENGL EMIRACSKHP ELKGCWAEIG KSLPHRPLTA IYKRARILLY  420
RSDERKWTPE EYEKIRRHVE KNGTSWISLA QELGKSEIHL KDTWRRIKPK NLKSVARFCI  480
SIKWKDSLQS QWTQDEYQNL FDLVNLDLRV KAHQEYDAGN RKLRDNIAWE AISDKLTTRN  540
HKNCCLKWYY QLASPLVQKG IWADTDDYRL VEALQNVDAV CVEDIDWDNL LDHRSGEVCR  600
QRWNEMVRYL GGHKEKPFIE QVEVLSKRYC PEMVDYREGE A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16166RKKRKE
26167RKKRKEK
3135143KKKKKKERK
4207212KKRRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643783.10.0RNA polymerase I termination factor isoform X1
TrEMBLA0A0D3GFQ90.0A0A0D3GFQ9_9ORYZ; Uncharacterized protein
STRINGOBART06G12040.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.13e-95MYB_related family protein