PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G09910.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 461aa    MW: 50894.9 Da    PI: 11.9619
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G09910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.8e-074087345
                     SS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwq 45
                     +WT+eEd  l d  ++l  +      +Wk I+r +  gR+  ++k rw 
  OBART06G09910.1 40 AWTPEEDAALDDELTRLVLRpggggdRWKDISRAVH-GRSSRSVKRRWM 87
                     69999987766666666555555599**********.***********7 PP
2Myb_DNA-binding22.42.9e-07167210345
                      SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwq 45 
                      ++T+ +d+ l ++v + Ggg  +Wk I+r +  gR+  ++k rw 
  OBART06G09910.1 167 PFTAADDDELTRLVLRPGGGgdRWKDISRAVH-GRSSRSVKRRWM 210
                      79******************************.***********7 PP
3Myb_DNA-binding43.76.1e-14356404348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT+e+d  l ++  ++G+++W+++a+ m+    +R++ qc++rw+++l
  OBART06G09910.1 356 AWTPELDAVLERLAMEHGSRHWRRVAAQMPrhrSRRSPAQCRDRWRDHL 404
                      7********************************9************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0113792IPR001005SANT/Myb domain
SuperFamilySSF466893.45E-74089IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.2E-84088IPR009057Homeodomain-like
CDDcd001671.42E-54089No hitNo description
PROSITE profilePS500907.7474190IPR017877Myb-like domain
SuperFamilySSF466896.36E-9156212IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-7159211IPR009057Homeodomain-like
SMARTSM007170.0073164215IPR001005SANT/Myb domain
CDDcd001671.64E-4167212No hitNo description
PROSITE profilePS500907.062167213IPR017877Myb-like domain
PROSITE profilePS5129416.575349408IPR017930Myb domain
SMARTSM007172.3E-8353406IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-15356421IPR009057Homeodomain-like
CDDcd001677.00E-9356404No hitNo description
SuperFamilySSF466891.02E-15356428IPR009057Homeodomain-like
PfamPF002494.4E-13356404IPR001005SANT/Myb domain
SMARTSM0071750409447IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MAMMEPSSSS SSSTASAVTP SSAPPSGRCC VVLRIKLPAA WTPEEDAALD DELTRLVLRP  60
GGGGDRWKDI SRAVHGRSSR SVKRRWMEIG TSDELLRKLA PPVIDAVSGH GGGRRRSRRR  120
GRPGAPRRGE RLPPLAPRGG ADAAQALASA VPRQVEDHLA RDVFHRPFTA ADDDELTRLV  180
LRPGGGGDRW KDISRAVHGR SSRSVKRRWM EIGTSDELLR KLWHPRSSML SPATVVDAPP  240
VGTLRLPWGR SRFTIPDVGP AAPSTPRLDA YSGRSFTIPS TSIARRTVSF WALCDPSRSA  300
ATHGCRSNTS APLNPHKPPI PLALSSSSSA ASVFASSSAT SPPLGRCVVR IRLPPAWTPE  360
LDAVLERLAM EHGSRHWRRV AAQMPRHRSR RSPAQCRDRW RDHLARDVFH RPFTADDDAE  420
LARLCLRLDD GRSSRAVKRR WRELRKSDAF LGKLWRRPLS H
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1434439RAVKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3GF190.0A0A0D3GF19_9ORYZ; Uncharacterized protein
STRINGOBART06G09910.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83601346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.15e-13myb domain protein r1