PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G04880.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 318aa    MW: 34816.8 Da    PI: 9.1713
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G04880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.61.6e-09177213339
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39 
                       WT+eE+ l+  + + +G g+Wk I++++ ++Rt+ q
  OBART06G04880.1 177 IWTEEEHRLFMVGLRVFGRGDWKNISKHLVTTRTAAQ 213
                      6*********************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.066169222IPR017930Myb domain
SuperFamilySSF466894.81E-9172213IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-7173213IPR009057Homeodomain-like
PfamPF002493.6E-7178213IPR001005SANT/Myb domain
CDDcd001671.42E-6178213No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MGSIVIEGWT ASEIEEARSL ITSPNNGGEG GDGEGNKQKH CGHIVMELHE WFPWKTIGQV  60
IGLYMKLNAG KPMVMHSLNK SDANNSIGEV DHVSALANGN PVRLEEHRPM LNNVGLVFDY  120
PLEEMEMENQ TDKEPKMVVE EEVQPKEGLV IKEKEAGVSK IHTNSQHVTP SIKRRVIWTE  180
EEHRLFMVGL RVFGRGDWKN ISKHLVTTRT AAQPRAEVLP QDGGPRRGRP PPAKRRRRRI  240
TGDQQAAAAE HAAALRRRMP VPPPPFNPFL LPSLVAPVMH RLLPPGSQAA GAAASGSGGQ  300
GASLPQMPWI NGANGMGC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233238KRRRRR
2233239KRRRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0028540.0AP002854.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0014B15.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642214.11e-162uncharacterized protein LOC107281238
TrEMBLA0A0D3GDD60.0A0A0D3GDD6_9ORYZ; Uncharacterized protein
STRINGOBART06G04880.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP165491112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.13e-12MYB_related family protein