PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G03990.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 348aa    MW: 37323.4 Da    PI: 4.5226
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G03990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.1e-18121171256
              AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                      +++GVr ++ +g++ AeIr+      +++r++lg+f+taeeAa+ +++a+++l+g+
  OBART06G03990.1 121 KFRGVRKRP-WGKYGAEIRV----SqQSARVWLGTFDTAEEAARVYDHAALRLRGP 171
                      89*******.**********....3245**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-28120179IPR001471AP2/ERF domain
CDDcd000183.49E-28121179No hitNo description
PROSITE profilePS5103222.089121178IPR001471AP2/ERF domain
PfamPF008473.7E-11121170IPR001471AP2/ERF domain
SMARTSM003807.0E-34121184IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-20121179IPR016177DNA-binding domain
PRINTSPR003672.1E-10122133IPR001471AP2/ERF domain
PRINTSPR003672.1E-10144160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MIEAIVEKKA RRIVRGRWHV EASNEAAAAA PAVVAAPAPR VVRVLYRDHD ATDSSGDDDG  60
EDDAPRRARL LVHEIHVARQ PVAMSPAAAA SSSQRRRVGP MKRRTEAAVD AMAAEVAPER  120
KFRGVRKRPW GKYGAEIRVS QQSARVWLGT FDTAEEAARV YDHAALRLRG PAATTNFPVT  180
PTAPAPSPPP SRDTNAGAAS GYDESSDESQ LVGSPVSVLR PMPARATAKK EAKEEDDSAP  240
DILGISAGDG LIFPFTGDVM NFPPPDEDMF GGGISFGEPT PPPMVFDDDC MARLGHVPND  300
DVDDEHPVTS SYFLDDDLGD LPSWTEVDGF FSDVGGDDLF AAEPFPAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-201171781072Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642210.21e-152ethylene-responsive transcription factor 11
TrEMBLA0A0D3GD390.0A0A0D3GD39_9ORYZ; Uncharacterized protein
TrEMBLI1PZQ80.0I1PZQ8_ORYGL; Uncharacterized protein
STRINGORGLA06G0037100.10.0(Oryza glaberrima)
STRINGOBART06G03990.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131332332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.14e-25cytokinin response factor 4