PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G00550.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 297aa    MW: 33480.2 Da    PI: 7.6078
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G00550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.64.8e-09861231954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+  ++  LA+++gL+ +qV++WF N R +
  OBART06G00550.1  86 FEHflHPYPNDVDKHILARQTGLSRSQVSNWFINARVR 123
                      554459******************************88 PP
2BELL29.12.6e-104321846
             BELL 18 eVdkrYkqyveqlqtvissFeavaglgsa 46
                     +Vd+rY++y+eq+++v  sFeavag g+a
  OBART06G00550.1  4 KVDRRYRRYREQMRAVEVSFEAVAGGGAA 32
                     7*************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075265.6E-8433IPR006563POX domain
PROSITE profilePS5007111.56464127IPR001356Homeobox domain
CDDcd000862.56E-1167128No hitNo description
SMARTSM003896.5E-967131IPR001356Homeobox domain
SuperFamilySSF466892.44E-1768134IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.8E-2870133IPR009057Homeodomain-like
PfamPF059201.1E-1784123IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEWKVDRRYR RYREQMRAVE VSFEAVAGGG AAPGATKGDT PRLRVLDQCL RQQRAFQQSG  60
AVDSFPWRPQ RGLPERAVAV LRAWLFEHFL HPYPNDVDKH ILARQTGLSR SQVSNWFINA  120
RVRLWKPMIE DMYKEETKPE SSDGNNKLNP SAAGNKQQHR DDPKKNYTAT TAEASLVQQS  180
SYHLHLRSSG NPNSSSLMIP AAASTSIDHH HDSSHQLLGG HSYSSAAGLH HGHGGAVSLT  240
LGLQQQQQPF AASMMHQHQQ QQQQQQSFMV EAAEEEEDDV LPYRNLMESQ LLHDFAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-1573130562Homeobox protein Meis2
3k2a_B2e-1573130562Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2188950.0AB218895.1 Oryza sativa Japonica Group mRNA for OsBEL protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641004.11e-172homeobox protein BEL1 homolog
TrEMBLA0A0D3GBX10.0A0A0D3GBX1_9ORYZ; Uncharacterized protein
STRINGOBART06G00550.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63983547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.12e-56TALE family protein