PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART06G00520.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 156aa MW: 17727.3 Da PI: 10.4252 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88 | 5.2e-28 | 3 | 52 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie++++rqvtfskRr+g+lKKA+ELSvLCdaeva+++fs++g+++ ++s OBART06G00520.3 3 RIEDTTRRQVTFSKRRKGLLKKASELSVLCDAEVALLVFSPRGRFFHFAS 52 8*********************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00265 | 1.37E-31 | 1 | 74 | No hit | No description |
PROSITE profile | PS50066 | 26.492 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.4E-24 | 1 | 59 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.9E-28 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.6E-26 | 3 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-15 | 16 | 31 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-15 | 31 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MRRIEDTTRR QVTFSKRRKG LLKKASELSV LCDAEVALLV FSPRGRFFHF ASAPSYATIP 60 PSSFFPTTGT IDRYISHTQE APANKKPREL TVKQKKLMDK ISQLQQQEKI LSEENALLLD 120 QGKVQHAPIG APAREMNQNQ HVQDIDVDTE LVIGRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP000616 | 1e-110 | AP000616.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone:P0514G12. | |||
GenBank | AP014962 | 1e-110 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | CT836306 | 1e-110 | CT836306.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN025E20, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642540.1 | 1e-75 | MADS-box transcription factor 50-like isoform X1 | ||||
Refseq | XP_015642541.1 | 1e-75 | MADS-box transcription factor 50-like isoform X1 | ||||
Swissprot | P0C5B2 | 4e-26 | MAD56_ORYSJ; MADS-box transcription factor 56 | ||||
TrEMBL | A0A0D3GBW8 | 1e-111 | A0A0D3GBW8_9ORYZ; Uncharacterized protein | ||||
STRING | OBART06G00520.2 | 1e-112 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 1e-27 | AGAMOUS-like 20 |
Publications ? help Back to Top | |||
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