PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART05G22670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ARF | ||||||||
Protein Properties | Length: 712aa MW: 77325 Da PI: 9.4482 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.1 | 8.1e-24 | 158 | 259 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae++ + + s++l+ d++g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F + + OBART05G22670.1 158 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyKTVR-PSQELIAVDLHGTQWKFRHIYRGQPRRHLLTTGWSSFVNRKKLVSGDAVLFL--RGD 248 99****************************864443.4569************************************************..348 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +++l+++v+r+ OBART05G22670.1 249 DGQLRLGVRRA 259 88899999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.23E-42 | 147 | 296 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-38 | 153 | 261 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.25E-22 | 156 | 258 | No hit | No description |
PROSITE profile | PS50863 | 12.887 | 158 | 260 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.3E-23 | 158 | 260 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-21 | 158 | 259 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.1E-27 | 285 | 364 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 712 aa Download sequence Send to blast |
MRGARACPSS SLCGNSGYQK RQKPRQGKAP GPATPRWWSP EPPLLLPPPL VASALARLRL 60 GGKVAFIDAA AAPLLLLTRS SSASLAALHR NQGQFGARRG GGRRRWADAA TDEVYARLAL 120 VAEGEMLQRN FREGGGEDGA GEMEGCDAEK KPRMPHMFCK TLTASDTSTH GGFSVPRRAA 180 EDCFPPLDYK TVRPSQELIA VDLHGTQWKF RHIYRGQPRR HLLTTGWSSF VNRKKLVSGD 240 AVLFLRGDDG QLRLGVRRAV QLRNEALFEP VNSSDSKLRI LSSVASSLEN KSVFHICFNP 300 RSGASEFIVP YWRLLKSLNH PFSIGMRFRV CYESEDANER SAGLISGISE VDPIRWPGSR 360 WKCLLVRWDD STDSSHQNRV SPWEIERVGG SVSVTHSLSS GSKRTKLHFP QGSLDTPFLN 420 GNGHPDSMGT ENFHRVLQGQ EFRGSRSHGV VCSESPGVPN FQSPDNRRFS ADMRGYMMPA 480 SGPPQRNTEF TYQPIGFSES LGFPEVLQGQ EMSQVVPLFR GATFGARTQN DRVVSANSVH 540 RSAAQSGLLA STLGHPISQF TLSSSKVSSP SSVLMFNQAT APNHETVGGT NNKGMHVSQF 600 ASQEMLSETV TWPGTQRQTP SEITSNQFAL ARIPAPPSGA ESGLPKRDAG RSSCRLFGFS 660 LTGNMLGEDG EGLDDGAIEA GCENPPVLEL FGHSHSTPGA LHALCAAAPL GM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 3e-75 | 104 | 386 | 81 | 353 | Auxin response factor 1 |
4ldy_B | 3e-75 | 104 | 386 | 81 | 353 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK067927 | 0.0 | AK067927.1 Oryza sativa Japonica Group cDNA clone:J013127F13, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637659.1 | 0.0 | auxin response factor 14 | ||||
Swissprot | Q0DGS1 | 0.0 | ARFN_ORYSJ; Auxin response factor 14 | ||||
TrEMBL | A0A0D3G9R7 | 0.0 | A0A0D3G9R7_9ORYZ; Auxin response factor | ||||
STRING | OBART05G22670.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5113 | 27 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33860.1 | 1e-122 | ARF family protein |
Publications ? help Back to Top | |||
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