PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART05G21860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 324aa MW: 34146.7 Da PI: 6.4491 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.4 | 7.9e-06 | 213 | 250 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L OBART05G21860.1 213 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 250 677888999*******998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.744 | 201 | 250 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.64E-12 | 211 | 268 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.89E-6 | 211 | 255 | No hit | No description |
SMART | SM00353 | 0.0061 | 212 | 256 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.9E-9 | 215 | 258 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MADEHEWWNS PCSARTGDDE AACSTVDADE SAVGSTPMSF GHGGQPASLS DAAASSSSSS 60 FLLAGQHMDY WTQDFMGGRA AAAATASFDT LLQLQLQGGD AASRRLLLGD HAAAPPRHLV 120 APGAPYGGGG GGDDTAAPPR GLSPTPYEAA DNLQQQQSFP GGHHVVSNTD RLHDHHQDAG 180 SPSPATRSSP GSPAAAKKPR IEAPSPMPTF KVRKEKLGDR ITALQQLVSP FGKTDTASVL 240 HEAIEYIKFL HDQVASLSSP YLRCGRPVQL QHQQGSHKVN GNCEGKQLDL RSRGLCLVPV 300 ASTYTVASET ATEFWHPTFG GTFR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT837834 | 0.0 | CT837834.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129D11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638165.1 | 0.0 | transcription factor bHLH68 isoform X2 | ||||
TrEMBL | A0A0D3G9G9 | 0.0 | A0A0D3G9G9_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1PX06 | 0.0 | I1PX06_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA05G0190400.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | OBART05G21860.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2970 | 34 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61660.1 | 6e-49 | bHLH family protein |