PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART05G21200.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 412aa MW: 46196.6 Da PI: 10.6629 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 91 | 1e-28 | 194 | 254 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGse......kAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG++ +AtPk +l +m+v+g+t++hvkSHLQkYRl OBART05G21200.2 194 KQRLRWTSDLHNRFVDAIAQLGGPDsgyslsRATPKGVLTVMGVPGITIYHVKSHLQKYRL 254 79*********************975555558****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.4E-28 | 192 | 255 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.97E-14 | 193 | 254 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.1E-21 | 194 | 255 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.0E-6 | 196 | 253 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 4.6E-24 | 286 | 332 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MGPTPWTRPT VHSSFPLPSR RRENPNQHNE TTRKRECEAK RAKKEREKKK SPPNPKASLS 60 SLSLALPSPR VAFAGHHRPR RFPLLSSPRV ASFLPFLTPP NSQLGIPLGR RRKRKQQRRA 120 SGSPALPAFW WWWRRPAADR CLAVPVSILM MYHAKKFSVP FGPQSTQSNE HMSNIGAFGG 180 SNMGSPANPA GSGKQRLRWT SDLHNRFVDA IAQLGGPDSG YSLSRATPKG VLTVMGVPGI 240 TIYHVKSHLQ KYRLAKYIPE SPAEGSKDEK KDSSDSLSNT DSAPGMQINE ALKMQMEVQK 300 RLHEQLEVQR QLQLRIEAQG KYLQMIIEEQ QKLSGSLKAC EEQKLPHSPP SLDDYPDSMQ 360 PSPKKPKMDN LSPDSVRDVT QSDFESHLIG PWDQEAAFRV DEFKADPGLN KS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-18 | 193 | 257 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-18 | 193 | 257 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-18 | 193 | 257 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-18 | 193 | 257 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-18 | 193 | 257 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-18 | 193 | 257 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-18 | 193 | 257 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-18 | 193 | 257 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 108 | 115 | GRRRKRKQ |
2 | 108 | 116 | GRRRKRKQQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK061987 | 0.0 | AK061987.1 Oryza sativa Japonica Group cDNA clone:001-043-B07, full insert sequence. | |||
GenBank | AK069306 | 0.0 | AK069306.1 Oryza sativa Japonica Group cDNA clone:J023012H08, full insert sequence. | |||
GenBank | CT830069 | 0.0 | CT830069.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA051M08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639152.1 | 0.0 | myb family transcription factor PHL7 | ||||
Refseq | XP_015639153.1 | 0.0 | myb family transcription factor PHL7 | ||||
Refseq | XP_015639154.1 | 0.0 | myb family transcription factor PHL7 | ||||
Refseq | XP_015639155.1 | 0.0 | myb family transcription factor PHL7 | ||||
Swissprot | Q9SJW0 | 2e-71 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A0D3G9A0 | 0.0 | A0A0D3G9A0_9ORYZ; Uncharacterized protein | ||||
STRING | OBART05G21200.2 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7913 | 33 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 3e-52 | G2-like family protein |