PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART05G20480.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 306aa MW: 34756.1 Da PI: 9.0376

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART05G20480.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58.1	1.6e-18	139	226	1	96
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k++++s+v++ +l lp +f++ h + +++ +++lede+g +++ + +++ + l++GW++F+ ++L++gD++vF+l + ++f ++ OBART05G20480.1 139 FVKTMVRSHVSSCFWLGLPTRFCKLHL-P-PKEYKMVLEDEEGGEFDSVY--IGNRTG--LSGGWRGFAMHHNLEDGDSLVFELAEPDRF--KI 224 89*******************8885.3.36679***********..555444..*********************9876777..55 PP EE CS B3 95 kv 96 + OBART05G20480.1 225 YI 226 55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.4E-21	131	228	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.67E-24	132	228	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.90E-26	137	228	No hit	No description
Pfam	PF02362	4.4E-17	139	227	IPR003340	B3 DNA binding domain
SMART	SM01019	2.5E-23	139	230	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.464	139	230	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MAAEAGSAAA GAAYEEERRK RVLENLKHLE DLGIKKMSKS LLEAARLQKS TLASPKPRKK 60 FEVGATEVRR SSRARNSVSY KENFDELDSF LCRRRGSRIR STEQGRDYTG RVASYEQQQR 120 AFKKAERLQN SLDPENPSFV KTMVRSHVSS CFWLGLPTRF CKLHLPPKEY KMVLEDEEGG 180 EFDSVYIGNR TGLSGGWRGF AMHHNLEDGD SLVFELAEPD RFKIYIIKAV DEDANESEPA 240 DEEAVGDKDT STEDAAEQDD SPNAEPLKGA KRRKLRGRRL WVFHKTITTL FVAATDRVFT 300 IIGRFR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	266	272	LKGAKRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK068705	0.0	AK068705.1 Oryza sativa Japonica Group cDNA clone:J013160D16, full insert sequence.
GenBank	HQ858877	0.0	HQ858877.1 Oryza sativa Japonica Group isolate UT1755 ABIVP1 transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015639490.1	0.0	B3 domain-containing protein Os05g0481400 isoform X1
Swissprot	Q5KQI4	0.0	Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBL	A0A0D3G916	0.0	A0A0D3G916_9ORYZ; Uncharacterized protein
STRING	OBART05G20480.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11370	33	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58280.1	1e-42	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349]