PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART05G18080.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 319aa MW: 33466.9 Da PI: 6.229

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART05G18080.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	117.6	5e-37	30	84	6	60
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +cprC+s ntkfCyynnysl qPryfCk CrryWtkGG+lrnvPvGgg+rkn++ OBART05G18080.1 30 PNCPRCESPNTKFCYYNNYSLXQPRYFCKXCRRYWTKGGSLRNVPVGGGCRKNRR 84 68***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-28	20	84	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.36	30	84	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.5E-31	30	84	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	32	68	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MLAYAAAAGR RAVVVDHHQR RYRPNVEVAP NCPRCESPNT KFCYYNNYSL XQPRYFCKXC 60 RRYWTKGGSL RNVPVGGGCR KNRRGKAVRA MVGETMTARG GGGGGAAAFS HRFHGPVRPD 120 MILEGMAGST AASAGLGEQP GVAEPDEKPT AADGSTIDLA LLYAKFLNHH QPTMAEQGGG 180 AAVPESVDTS SGSSSDRTTS PAAAQPAAAA AYGPGQDGLV GEPISTEEHG AAAMARCAQA 240 LGELNFSVDQ ISCYTSLGLP TTDGGDLILP STLDQHAKYE PFDSLPEDAL SLHDIISGDD 300 DVWCNALGCQ GLEAALCRP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC147462	0.0	AC147462.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1110B01, complete sequence.
GenBank	AP014961	0.0	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBank	CP012613	0.0	CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015638935.1	0.0	uncharacterized protein LOC4338919
TrEMBL	A0A0D3G863	0.0	A0A0D3G863_9ORYZ; Uncharacterized protein
STRING	OBART05G18080.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2659	36	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	1e-34	Dof family protein