PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART05G17920.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bZIP | ||||||||
Protein Properties | Length: 149aa MW: 16892.1 Da PI: 10.4124 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 47.9 | 3e-15 | 61 | 114 | 3 | 56 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 + +r++r++kNRe+A rsR+RK+a+i+eLe v+eLe+e +L e ee +++ OBART05G17920.2 61 AMQRQKRMIKNRESAARSRERKQAYIAELEAQVAELEEEHAQLLREQEEKNQKR 114 689***************************************998877655554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.0E-10 | 59 | 128 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.9E-13 | 61 | 113 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.875 | 61 | 109 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 1.94E-16 | 63 | 109 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 5.7E-14 | 64 | 111 | No hit | No description |
SuperFamily | SSF57959 | 2.38E-11 | 64 | 110 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 66 | 81 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MTLEDFLARE DDPRATAVEG NMVVGFPNGT EGVGTAGGGR GGGGGGRGRK RTLMDPADRA 60 AMQRQKRMIK NRESAARSRE RKQAYIAELE AQVAELEEEH AQLLREQEEK NQKRLKEKWH 120 VFMQIKEQAV AVVIRKKTQD LRRTNSMEW |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 37 | 45 | GGRGGGGGG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the ABA-responsive elements (ABREs) in vitro. Involved in abiotic stress responses and abscisic acid (ABA) signaling (PubMed:20039193). Involved in the signaling pathway that induces growth inhibition in response to D-allose (PubMed:23397192). {ECO:0000269|PubMed:20039193, ECO:0000269|PubMed:23397192}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00648 | PBM | Transfer from LOC_Os05g36160 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by anoxia, drought, salt stress, oxidative stress, cold and abscisic acid (ABA) (PubMed:20039193). Induced by D-allose (PubMed:23397192). {ECO:0000269|PubMed:20039193, ECO:0000269|PubMed:23397192}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT834109 | 0.0 | CT834109.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA060C07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639395.1 | 1e-80 | bZIP transcription factor 12-like | ||||
Swissprot | Q0JHF1 | 7e-52 | BZP12_ORYSJ; bZIP transcription factor 12 | ||||
TrEMBL | A0A0E0HF20 | 1e-103 | A0A0E0HF20_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA05G18780.2 | 1e-104 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2665 | 37 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03970.1 | 9e-13 | G-box binding factor 4 |
Publications ? help Back to Top | |||
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