PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G17860.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 271aa    MW: 27828.1 Da    PI: 4.6896
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G17860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.67.2e-14791191255
              AP2  12 rgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      +  W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  OBART05G17860.1  79 TYTWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 119
                      678*******7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103218.91367127IPR001471AP2/ERF domain
SMARTSM003801.3E-2075133IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-2480128IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-1580128IPR016177DNA-binding domain
PfamPF008472.7E-781119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MADQRRRFRG GGDWQASVDD VVDDGGDYGH GAQGSYYYYG AAPTSTPEFV AGGQQEQLSS  60
DVPQGGASLG LAMDEHSPTY TWAAEIRDPH KAARVWLGTF ETAEAAARAY DEAALRFRGS  120
RAKLNFPEDA RLSSPPAGAG AGGATAAAQP VPVAYPASAV SDYLQYQMLL HGGGGGGGGR  180
YPLYYGGGAA AAMSSSLGPY SSIPTSSVTV ASVPSSSSAA SSSSGYGAPA EHGEAVQWTS  240
WPDGGGWTYP ATTSSWSGSS QYPPPPRPPQ Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-14811271663ATERF1
3gcc_A2e-14811271663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1053180.0AC105318.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1058_F05, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638449.21e-102ethylene-responsive transcription factor ABR1
TrEMBLA0A0D3G8320.0A0A0D3G832_9ORYZ; Uncharacterized protein
STRINGOBART05G17860.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1742999
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.15e-16ethylene response factor 110