PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G01300.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WOX
Protein Properties Length: 285aa    MW: 29790.6 Da    PI: 8.2328
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G01300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.56.3e-202685357
                     --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     +R+++t+eql  Lee+++   r+p+a+++++++++l    +++ ++V++WFqN++a++++
  OBART05G01300.1 26 TRWCPTPEQLMMLEEMYRGgLRTPNAAQIQQITAHLstygRIEGKNVFYWFQNHKARDRQ 85
                     8*****************99*************************************996 PP
2Wus_type_Homeobox118.72.5e-382486264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       ++tRW+PtpeQ+++Lee+y+ GlrtPn+++iq+ita+L++yG+ie+kNVfyWFQN+kaR+rqk
    OBART05G01300.1 24 STTRWCPTPEQLMMLEEMYRGGLRTPNAAQIQQITAHLSTYGRIEGKNVFYWFQNHKARDRQK 86
                       579***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003892.4E-42390IPR001356Homeobox domain
SuperFamilySSF466898.13E-112685IPR009057Homeodomain-like
PfamPF000461.3E-172685IPR001356Homeobox domain
CDDcd000866.55E-52686No hitNo description
Gene3DG3DSA:1.10.10.604.7E-72685IPR009057Homeodomain-like
PROSITE profilePS500719.7343186IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MAPAVQQQQS GGGGGSTGAA AVVSTTRWCP TPEQLMMLEE MYRGGLRTPN AAQIQQITAH  60
LSTYGRIEGK NVFYWFQNHK ARDRQKLRRR LCISHHLLSC AHYYHHHLAA AAAAVPPPQL  120
LPPLHPSSSS SCGGGLIDHA NSLLSPTSAT TPTSAAAAAA AAAYTTSYYY PFTAAAAPPP  180
PRTSPAASPL FHYNQGGGGV VLPAAEAIGR SSSSSDYSLG KLVDNFGVAL EEAFPAQPQQ  240
PATTMAMTAV VDTTAVAAAA GGFCRPLKTL DLFPGGLKEE QHDVV
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4902440.0AM490244.1 Oryza sativa mRNA for putative wuschel homeobox protein (wox3 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639083.11e-114putative WUSCHEL-related homeobox 2
SwissprotA2XZR31e-118WOX2_ORYSI; Putative WUSCHEL-related homeobox 2
TrEMBLA0A0D3G2L20.0A0A0D3G2L2_9ORYZ; Uncharacterized protein
STRINGOBART05G01300.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21773897
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.12e-38WOX family protein