PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G01080.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 285aa    MW: 32079.3 Da    PI: 7.5025
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G01080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.82.9e-1456103148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT++Ed +lv  v+++G ++W+  a+  g++Rt+k+c++rw +yl
  OBART05G01080.1  56 KGPWTEQEDVQLVWFVRLFGERRWDFLAKVSGLKRTGKSCRLRWVNYL 103
                      79********************************************97 PP
2Myb_DNA-binding50.83.8e-16109154148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rgr T++E+ l+++++ q+G++ W++Iar ++ gRt++++k++w++++
  OBART05G01080.1 109 RGRITADEERLILHLHSQWGSR-WSRIARSLP-GRTDNEIKNFWRTHM 154
                      899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.08251103IPR017930Myb domain
SuperFamilySSF466892.98E-2753150IPR009057Homeodomain-like
SMARTSM007171.8E-1255105IPR001005SANT/Myb domain
PfamPF002497.2E-1356103IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-1957110IPR009057Homeodomain-like
CDDcd001676.39E-958103No hitNo description
PROSITE profilePS5129422.894104158IPR017930Myb domain
SMARTSM007177.0E-15108156IPR001005SANT/Myb domain
PfamPF002491.0E-13109153IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-22111156IPR009057Homeodomain-like
CDDcd001676.31E-10113154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MVVKKAATMA EAEAEEEMMM RMMCGSGGNE MMKTKMKKKN REGEEEEVSG GGRMRKGPWT  60
EQEDVQLVWF VRLFGERRWD FLAKVSGLKR TGKSCRLRWV NYLHPGLKRG RITADEERLI  120
LHLHSQWGSR WSRIARSLPG RTDNEIKNFW RTHMRKIAHH AKKKTNSPSP APTTSSGSLS  180
SSLTTATTTM ATAAALQESS SCGGEDEAVD QLVAAATTPA SQLLTMDYTM DQLWNDIAAA  240
ETDTSCYDAA AMASPPSPVW EFCTDYSLWR IDDEEYYKKM LDASQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-25561564103MYB PROTO-ONCOGENE PROTEIN
1h88_C6e-255615658157MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-255615658157MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-25561564103C-Myb DNA-Binding Domain
1msf_C2e-25561564103C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0939210.0AC093921.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0041A22, complete sequence.
GenBankAC1085040.0AC108504.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1654_B10, complete sequence.
GenBankAK1116340.0AK111634.1 Oryza sativa Japonica Group cDNA clone:J013119H17, full insert sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639553.11e-145transcription factor MYB48
SwissprotQ4JL765e-67MYBA2_ORYSJ; Myb-related protein MYBAS2
TrEMBLA0A0D3G2I90.0A0A0D3G2I9_9ORYZ; Uncharacterized protein
STRINGOBART05G01080.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.35e-61myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]