PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART05G00180.2

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 339aa MW: 36896 Da PI: 6.502

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART05G00180.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.5	5.7e-09	190	237	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + + Y++sLq OBART05G00180.2 190 SHSLAERVRREKISERMKMLQSLVPGC----DKVTGKALMLDEIISYVQSLQ 237 8***********************9....555***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.44E-17	184	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.75E-11	184	241	No hit	No description
PROSITE profile	PS50888	15.675	186	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-17	186	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-6	190	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-10	192	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MESLCGQLEH EHEQQLHQSS SSSLLPYCFL SAPEPLPVPG FPAGCSNLEE KAAAAMAAYE 60 YESSSCSSLD PTSMPMVYSP IVLQPQECPL SFVFDNAAAA AGDNKWVPGI QGSCPCSLGS 120 TQDMDASWGK SRKHKRSNVG LKGLEEKKAR RVVLHQHDDD VKKKAKEAAS GEPPAGYIHV 180 RARRGQATDS HSLAERVRRE KISERMKMLQ SLVPGCDKVT GKALMLDEII SYVQSLQNQV 240 EFLSMKLASL SPMMYEFGPG IDMHPDVLRQ LAKMPHEMVQ CMGQMGSTGI SLQGLGGGPT 300 GFAQDGSSHM NMVVMQVGEQ GQQQGSLHQV EMSSHCFFH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK065864	0.0	AK065864.1 Oryza sativa Japonica Group cDNA clone:J013044E05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015640733.1	0.0	transcription factor bHLH63 isoform X1
Refseq	XP_015640734.1	0.0	transcription factor bHLH63 isoform X1
Refseq	XP_015640735.1	0.0	transcription factor bHLH63 isoform X1
Swissprot	Q93W88	4e-52	BH137_ARATH; Transcription factor bHLH137
TrEMBL	A0A0D3G281	0.0	A0A0D3G281_9ORYZ; Uncharacterized protein
STRING	OBART05G00180.1	0.0	(Oryza barthii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	4e-52	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]