PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G30700.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 330aa    MW: 36804.8 Da    PI: 7.2231
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G30700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM110.22.3e-347818531128
              NAM  31 eevikevdiykvePwdLpkkvkaeek..ewyfFskrdkkya....tgkrknratksgyWkatgkdkevlsk..kgel.....vglkktLvfykg 111
                      + +i+evd++++ePwdL  +++++++   +yfFs +d+ky+    tg+r+nrat++g+Wkatg+dk+vls+  +        +g++ktLvfy+g
  OBART04G30700.1  78 DGIIQEVDLNSIEPWDLL-QAQQHDQeyYCYFFSYKDRKYPsargTGTRTNRATAAGFWKATGRDKPVLSSsrS--SsspavIGMRKTLVFYRG 168
                      357**************7.34444441366**********98888899**********************8551..245556************ PP

              NAM 112 rapkgektdWvmheyrl 128
                      rap+g ktdW++heyrl
  OBART04G30700.1 169 RAPNGCKTDWIIHEYRL 185
                      ***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100537.45747205IPR003441NAC domain
SuperFamilySSF1019416.28E-3777205IPR003441NAC domain
PfamPF023654.4E-1390185IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MRLASAPAPA PVAHGQIKPS RILPFSNPLL MVMIRMEIFQ TNERVHDPPQ IRQTRRQDLL  60
LIGPAPIPYH MVVGQPDDGI IQEVDLNSIE PWDLLQAQQH DQEYYCYFFS YKDRKYPSAR  120
GTGTRTNRAT AAGFWKATGR DKPVLSSSRS SSSPAVIGMR KTLVFYRGRA PNGCKTDWII  180
HEYRLVAHHQ QPDGSCWVVC RAFHKPTTTT LQHQLHLHRP PPLLHHHGYY DDQYLYPPPA  240
AAGGGGLLCS PALDMELEDE EDESKMMILS NDNIPLVVSP TAVHTQGTGG DIINDATTAP  300
AAAAADHRRH PELLAAGPID TLLHHHHFTC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-278020546168Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7323420.0AL732342.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: B0518A01, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635310.11e-136NAC domain-containing protein 105
TrEMBLA0A0D3G2320.0A0A0D3G232_9ORYZ; Uncharacterized protein
STRINGOBART04G30700.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1902799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66300.11e-32NAC domain containing protein 105