PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G30660.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 522aa    MW: 56703 Da    PI: 5.7415
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G30660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.19.7e-25122226299
                      EEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 
                       k+lt+sd+++ g +++p+ +a+++       + ++ +s  lt+ d++g sWe+++iyr++++r++lt+GW++Fv+a++L +gD+vvF+  g  
  OBART04G30660.1 122 AKQLTQSDANNGGGFSVPRLCADHIfpalnldDDPPVQS--LTMGDLQGDSWEFRHIYRGTPRRHLLTTGWSKFVNAKQLVAGDTVVFMWCGAp 213
                      69*******************9777*****976676675..************************************************88655 PP

                      .SEE..EEEEE-S CS
               B3  88 .sefelvvkvfrk 99 
                        e++l+v+v+r+
  OBART04G30660.1 214 aPERKLLVGVRRA 226
                      7999999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.09E-26110230IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-31113235IPR015300DNA-binding pseudobarrel domain
CDDcd100174.14E-18119225No hitNo description
SMARTSM010191.4E-15121227IPR003340B3 DNA binding domain
PROSITE profilePS5086312.026121227IPR003340B3 DNA binding domain
PfamPF023621.4E-21122226IPR003340B3 DNA binding domain
PfamPF065075.1E-12249329IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MARPPAATAP PPPPPPPPPP PIDRLVWLAC AAPLSRIPVV GTQVSYFPEG HAEQCPAPLP  60
DPLPSAHRFF LCTITAVDLS ADTTTGEPYA TISLLPLRHD APPRPAAAEL AEAESQEFRY  120
YAKQLTQSDA NNGGGFSVPR LCADHIFPAL NLDDDPPVQS LTMGDLQGDS WEFRHIYRGT  180
PRRHLLTTGW SKFVNAKQLV AGDTVVFMWC GAPAPERKLL VGVRRAARYS GESACNARGR  240
VQPQEVMEAV RLAAEQAAFR VTYYPRHGAG EFVVPRVEVD KGLTTPWRCG MQVRAQVMEA  300
EDTRRLAWLN GTLTNLRHQQ IWRTLEVEWD ASAASSSMKN RFVNPWQVQP VDFPPLPMGL  360
KISNNNISAP VCNGDSLLVP PILMHPQPQP PADIQGARHN NGHAYADIPS SSTPSMVRTQ  420
QLFPRDLQIL VPHTDIVTPQ NGSPPDNPVN TPLSASDGMK TIQLFGVTIT SPVQGDTNGA  480
FASAQVNQVP EGVDDEPATE EASDTSLPDS LTNGHNQDGA RL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A2e-542435221356Auxin response factor 1
4ldy_B2e-542435221356Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1094490.0AK109449.1 Oryza sativa Japonica Group cDNA clone:001-113-A09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634416.10.0auxin response factor 13
SwissprotQ7XSS90.0ARFM_ORYSJ; Auxin response factor 13
TrEMBLA0A0D3G2270.0A0A0D3G227_9ORYZ; Auxin response factor
STRINGOBART04G30660.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113553137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.19e-76auxin response factor 17
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]